Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31535
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    25   0.58 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   0.58 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.3  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   4.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.1  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    22   4.1  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            21   7.1  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 536 FVVCCMLVLVSEMLIW 583
           ++ CCMLV+VS +  W
Sbjct: 249 YIPCCMLVIVSWVSFW 264


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 536 FVVCCMLVLVSEMLIW 583
           ++ CCMLV+VS +  W
Sbjct: 249 YIPCCMLVIVSWVSFW 264


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 552 IQHTTKRLSLHLTS 511
           +QHT  +L LHLTS
Sbjct: 664 VQHTQSQLHLHLTS 677


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 543 TTKRLSLHLTSHGYLPLI 490
           T  R+ LHL  H Y PL+
Sbjct: 126 TFLRVLLHLAMHDYPPLV 143


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 569  PIPEPTYNTQQNAYRYTLLRTV 504
            P+P   YNT     R T++R++
Sbjct: 1655 PVPGSNYNTCDRIKRGTVIRSI 1676


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 543 TTKRLSLHLTSHGYLPLI 490
           T  R+ LHL  H Y PL+
Sbjct: 94  TFLRVLLHLAMHDYPPLV 111


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 566 SEMLIWRIDLSVK 604
           ++M+IW +D S+K
Sbjct: 18  NQMMIWALDCSIK 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,106
Number of Sequences: 438
Number of extensions: 3019
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)