Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31534
         (552 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40684| Best HMM Match : NIF (HMM E-Value=0)                         30   1.4  
SB_40678| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)                        28   4.4  
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         28   5.8  
SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28)                  27   7.7  
SB_58958| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.35)             27   7.7  
SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_42066| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_40684| Best HMM Match : NIF (HMM E-Value=0)
          Length = 402

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +1

Query: 289 MLPRGETFVHTNELQMEEAVKVFRVLYYAKDFDVFMRTACWMR---ERINGGMFVYAFTA 459
           +L   ET VH +  ++E+A   F V Y    + VF+RT   ++   ER++    V  FTA
Sbjct: 220 VLDLDETLVHCSLNKLEDATLSFPVSYQDITYQVFVRTRPHLKYFLERVSKVFEVILFTA 279

Query: 460 A 462
           +
Sbjct: 280 S 280


>SB_40678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +1

Query: 178 MFEDIKEIAKEYNIEKSCDKYMNVDVVKQFMEMYKMGMLPRGETFVHTNELQMEEAVKV 354
           + ++I  I K++   K  +K MN++ +   MEMY   ML    TF+ + +       K+
Sbjct: 71  IMQEIGAIVKKHT-HKGEEKQMNINAIPNNMEMYMAFMLGNHLTFIDSFQFMSSSLEKL 128


>SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 1011

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 400 TACWMRERINGGMFVYAFTAACFHR 474
           TAC+  + I+GG+ V+++  + FHR
Sbjct: 836 TACFWGQLISGGITVFSYRISSFHR 860


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 446 TLLLPRASTEPTARVSTCPLLTRSIPTSSLT 538
           +LLLP      +A   T PLL++SIP+ S T
Sbjct: 208 SLLLPDMPITSSAMAPTFPLLSQSIPSMSTT 238


>SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28)
          Length = 336

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 364 LYYAKDFDVFMRTACWMRERINGGMFVYAFTAACFHRTD 480
           L+  ++F+V   T C + ER N      + +  CF+  D
Sbjct: 70  LFLVRNFEVAKVTVCCLHERSNAHCSKMSLSCVCFNHED 108


>SB_58958| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.35)
          Length = 1076

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 148 KLLDHILQPTMFEDIKEIAKEYNIEKSCDKYMNVDVVKQFMEMY 279
           ++L+H +Q  + E IK +     I K C  YM+   V Q +  Y
Sbjct: 327 RVLEHFMQAFVPEIIKRLKDLAQIAKDCFTYMDRGFVFQMISYY 370


>SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 755

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 422 GSTEACSSTLLLPRASTEPTARVSTCPLLTRSIPTSSLTALSS 550
           G+TEA SS  ++  AST  T   +T      + PT +  A  S
Sbjct: 316 GTTEALSSQSVISNASTTSTTSATTIAATGATTPTDTTQATPS 358


>SB_42066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 240

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
 Frame = +1

Query: 181 FEDIKEIAKEYNIEKSCDKYMNVDVVKQFMEMYKMG---MLPRGETFVHTNELQMEEAVK 351
           +  +K ++ +YN +K+ +     ++   F +   +     LP+     H +    EEA+ 
Sbjct: 141 YSKLKTLSVKYNNDKTRESVTEEELTSMFEDCGDVADFRFLPKDRKMAHLSMATTEEAID 200

Query: 352 VFRVLYYAKDFDVFMRTACWMRERIN 429
              V     D D+  R   W    +N
Sbjct: 201 ALIVSLSTVDADLCFRGFSWCDLPVN 226


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,341,372
Number of Sequences: 59808
Number of extensions: 304059
Number of successful extensions: 849
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)