Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31530
(498 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026212-4|AAF99973.2| 386|Caenorhabditis elegans Hypothetical ... 29 1.9
Z48783-2|CAC42295.1| 805|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z48783-1|CAA88701.1| 780|Caenorhabditis elegans Hypothetical pr... 28 4.3
AF233652-1|AAF63475.1| 780|Caenorhabditis elegans RFX-type tran... 28 4.3
AF226156-1|AAF61564.1| 805|Caenorhabditis elegans RFX-like tran... 28 4.3
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z71262-12|CAA95808.1| 545|Caenorhabditis elegans Hypothetical p... 27 7.6
U70857-3|AAN84873.1| 950|Caenorhabditis elegans Na/ca exchanger... 27 7.6
U70857-2|AAM29660.1| 975|Caenorhabditis elegans Na/ca exchanger... 27 7.6
U70857-1|AAM29661.1| 925|Caenorhabditis elegans Na/ca exchanger... 27 7.6
AJ001181-1|CAA04574.1| 925|Caenorhabditis elegans sodium-calciu... 27 7.6
U88180-1|AAB42294.1| 203|Caenorhabditis elegans Hypothetical pr... 27 10.0
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 27 10.0
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 27 10.0
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 27 10.0
>AF026212-4|AAF99973.2| 386|Caenorhabditis elegans Hypothetical
protein F52G3.5 protein.
Length = 386
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 249 TTTCTRPRTRFSL-KKPARSRTLAPKTKASRSRDSTNTLAPT 371
TTT P T KK ++R+ PKT + + +T T APT
Sbjct: 195 TTTTEEPSTTSEYRKKSKKNRSKRPKTTKTTTTSTTTTEAPT 236
>Z48783-2|CAC42295.1| 805|Caenorhabditis elegans Hypothetical
protein F33H1.1b protein.
Length = 805
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 179 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 274
P+G ++ Y I Y N V P G + LY ++
Sbjct: 178 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 209
>Z48783-1|CAA88701.1| 780|Caenorhabditis elegans Hypothetical
protein F33H1.1a protein.
Length = 780
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 179 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 274
P+G ++ Y I Y N V P G + LY ++
Sbjct: 153 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 184
>AF233652-1|AAF63475.1| 780|Caenorhabditis elegans RFX-type
transcription factor DAF-19 short variant protein.
Length = 780
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 179 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 274
P+G ++ Y I Y N V P G + LY ++
Sbjct: 153 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 184
>AF226156-1|AAF61564.1| 805|Caenorhabditis elegans RFX-like
transcription factor DAF-19 protein.
Length = 805
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 179 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 274
P+G ++ Y I Y N V P G + LY ++
Sbjct: 178 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 209
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 27.5 bits (58), Expect = 5.7
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 243 KATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTV 374
+ TTT +P T S KK + T P K S+ +T T +P V
Sbjct: 375 QVTTTTKKPSTTTSTKKLTTTTTTTP--KPSQKPTTTTTKSPVV 416
>Z71262-12|CAA95808.1| 545|Caenorhabditis elegans Hypothetical
protein F22D6.3a protein.
Length = 545
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +2
Query: 206 YGIIRY--DNDVAPEGYHYLYETENKILAEEAGKVENVGTENEGIKV 340
YGII+ D AP+G+ + I AG ++NV E+ G+ V
Sbjct: 178 YGIIKALPDGKSAPDGHELTVDYWEVIGKAPAGGIDNVLNESAGVDV 224
>U70857-3|AAN84873.1| 950|Caenorhabditis elegans Na/ca exchangers
protein 2, isoformd protein.
Length = 950
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 362 GPDGVTYRVDYTADENGFVADGAHIP 439
GPDG+T VDY ++ A +IP
Sbjct: 391 GPDGLTVMVDYFTEDGSANAGSDYIP 416
>U70857-2|AAM29660.1| 975|Caenorhabditis elegans Na/ca exchangers
protein 2, isoforma protein.
Length = 975
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 362 GPDGVTYRVDYTADENGFVADGAHIP 439
GPDG+T VDY ++ A +IP
Sbjct: 391 GPDGLTVMVDYFTEDGSANAGSDYIP 416
>U70857-1|AAM29661.1| 925|Caenorhabditis elegans Na/ca exchangers
protein 2, isoformb protein.
Length = 925
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 362 GPDGVTYRVDYTADENGFVADGAHIP 439
GPDG+T VDY ++ A +IP
Sbjct: 394 GPDGLTVMVDYFTEDGSANAGSDYIP 419
>AJ001181-1|CAA04574.1| 925|Caenorhabditis elegans sodium-calcium
exchanger protein.
Length = 925
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 362 GPDGVTYRVDYTADENGFVADGAHIP 439
GPDG+T VDY ++ A +IP
Sbjct: 394 GPDGLTVMVDYFTEDGSANAGSDYIP 419
>U88180-1|AAB42294.1| 203|Caenorhabditis elegans Hypothetical
protein T27A3.4 protein.
Length = 203
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +3
Query: 243 KATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLA 365
K + + +RPRTR + +RSR+ + ++ RSR +++ A
Sbjct: 130 KRSRSRSRPRTRSGSRSSSRSRSGSRRSSRRRSRHRSSSKA 170
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 26.6 bits (56), Expect = 10.0
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 10/93 (10%)
Frame = +2
Query: 143 VTPTYVASKVVPPSGAGYDYKYGIIRYDNDVAPEGYHYLYETENKILAEEAGKVEN---- 310
V PT + + P G YG+ D P+G ++ + E+ +EN
Sbjct: 8727 VLPTDASGHFIGPDGP-IPTDYGVTYSDTVTTPDGIPLSNDSTGAFITEDGTVIENNEDG 8785
Query: 311 --VGTENEGIKVKGF----YEYVGPDGVTYRVD 391
+G + + + + Y +GPDG D
Sbjct: 8786 KPIGPDGQVLPTDAYGNYIYPAIGPDGQALPTD 8818
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 26.6 bits (56), Expect = 10.0
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 10/93 (10%)
Frame = +2
Query: 143 VTPTYVASKVVPPSGAGYDYKYGIIRYDNDVAPEGYHYLYETENKILAEEAGKVEN---- 310
V PT + + P G YG+ D P+G ++ + E+ +EN
Sbjct: 8772 VLPTDASGHFIGPDGP-IPTDYGVTYSDTVTTPDGIPLSNDSTGAFITEDGTVIENNEDG 8830
Query: 311 --VGTENEGIKVKGF----YEYVGPDGVTYRVD 391
+G + + + + Y +GPDG D
Sbjct: 8831 KPIGPDGQVLPTDAYGNYIYPAIGPDGQALPTD 8863
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 26.6 bits (56), Expect = 10.0
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 10/93 (10%)
Frame = +2
Query: 143 VTPTYVASKVVPPSGAGYDYKYGIIRYDNDVAPEGYHYLYETENKILAEEAGKVEN---- 310
V PT + + P G YG+ D P+G ++ + E+ +EN
Sbjct: 8772 VLPTDASGHFIGPDGP-IPTDYGVTYSDTVTTPDGIPLSNDSTGAFITEDGTVIENNEDG 8830
Query: 311 --VGTENEGIKVKGF----YEYVGPDGVTYRVD 391
+G + + + + Y +GPDG D
Sbjct: 8831 KPIGPDGQVLPTDAYGNYIYPAIGPDGQALPTD 8863
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,359,859
Number of Sequences: 27780
Number of extensions: 172512
Number of successful extensions: 582
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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