Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31529
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.4  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.4  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.5  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
 Frame = -3

Query: 751 GYRGPPSRPSSRLTRTPVCA----KCWRTGPSRTRSVWTSSPTN*KRPVFSPRTLTENP 587
           G+  PP +     + +  C+    +C+  GP ++           ++PV S  T T +P
Sbjct: 274 GHGSPPVKQHRSSSASTTCSGHTVRCFTGGPRKSHESQCPMLQKLEKPVLSSSTTTTSP 332


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 665 DEERMDQLTNQLKEARLLAEDADGKSD 585
           D  R+D + +  ++ARLL E +  ++D
Sbjct: 218 DGFRIDAINHMFEDARLLDEPSANRTD 244


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 739 PPSRPSSRLTRTPV 698
           PPSRP+ +  R P+
Sbjct: 237 PPSRPTDKALRLPL 250


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +1

Query: 382 LPVRVFSCFLNSSTRWLAFS--SDT 450
           LPV +     + STRW+AF+  SDT
Sbjct: 106 LPVAISFFNDDLSTRWIAFNCLSDT 130


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +1

Query: 382 LPVRVFSCFLNSSTRWLAFS--SDT 450
           LPV +     + STRW+AF+  SDT
Sbjct: 106 LPVAISFFNDDLSTRWIAFNCLSDT 130


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +1

Query: 382 LPVRVFSCFLNSSTRWLAFS--SDT 450
           LPV +     + STRW+AF+  SDT
Sbjct: 106 LPVAISFFNDDLSTRWIAFNCLSDT 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,930
Number of Sequences: 438
Number of extensions: 3509
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)