Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31522
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    29   0.96 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   5.1  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    26   6.7  
SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p...    26   6.7  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    25   8.9  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   8.9  
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    25   8.9  

>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +1

Query: 82  DDDMYISVQNLLKYVSDVTTASERDGILFAGY-VFKSAPQRFRSSKWRVSLEEY 240
           DD +       LK   D     ER  ++   Y +FK A   F     R+++EEY
Sbjct: 816 DDVLIFKAVESLKKAKDTVDIEERQSLIELSYTLFKKAAHVFTPEDLRLAVEEY 869


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = -1

Query: 289 TPRTPRPSRKAATCPRDTPPRTPATCSTGTVAAP 188
           TP  P P     + P   PP  P +   G  AAP
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP 447


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 289 TPRTPRPSRKAATCPRDTPPRTPATCSTGTVAAP 188
           TP TP      +T    TPP   +T STGT ++P
Sbjct: 299 TPVTPTVP-PTSTSSTSTPPPPASTSSTGTSSSP 331



 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 289 TPRTPRPSRKAATCPRDTPPRTPATCSTGTVAAP 188
           TP TP      +T    TPP   +T STGT ++P
Sbjct: 353 TPVTPTVP-PTSTSSTSTPPPPASTSSTGTSSSP 385


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/44 (20%), Positives = 22/44 (50%)
 Frame = +1

Query: 388 IVPTHCPHFHFYKKPYEREVYSDVIASHGYSNHDELIRVWNEQN 519
           +VP+      FY  P   + Y  ++ + G  N+ ++ R + +++
Sbjct: 198 VVPSRLNPGKFYALPQSPQQYKQILMASGIGNYYQIARCFRDED 241


>SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 202

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 372 DYAEVNVIESEMLHEQASDVEHL 304
           +Y  +N+ ++  LH +A+DVE L
Sbjct: 171 EYGTINLTKNSQLHVRATDVERL 193


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 556  RVYSLAARTTKRCDTSLETL 615
            R+YSL+A   K CD ++E L
Sbjct: 1046 RIYSLSADMVKACDEAVERL 1065


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 363  RHSREEDGHSADSLSAFPLLQEAVRARGL*RCDRLA 470
            +HS E +GHS+D+ S F +  + V    L  C + A
Sbjct: 1508 QHSYETNGHSSDTHSLFVINSQRVVGDILQYCSQFA 1543


>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = -2

Query: 444 LSLVRLLVEVEMRTMSRHY----AHLLRDYAEVNVIESEML 334
           L ++  +V  EM  M++++    +HLL DY ++ ++E E +
Sbjct: 191 LDVIPSVVAQEMCNMTKYFELNNSHLLGDYVKLEMLEKERI 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,857,516
Number of Sequences: 5004
Number of extensions: 55665
Number of successful extensions: 167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)