Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31521
         (793 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27554| Best HMM Match : cNMP_binding (HMM E-Value=2.6)              40   0.002
SB_19865| Best HMM Match : cNMP_binding (HMM E-Value=8.3e-39)          33   0.27 
SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_58603| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_32300| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_9006| Best HMM Match : WSC (HMM E-Value=0.85)                       28   7.5  
SB_17340| Best HMM Match : 7tm_3 (HMM E-Value=0)                       28   7.5  
SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   10.0 
SB_31661| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   10.0 
SB_3818| Best HMM Match : Pox_A32 (HMM E-Value=0.022)                  28   10.0 

>SB_27554| Best HMM Match : cNMP_binding (HMM E-Value=2.6)
          Length = 82

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 17/20 (85%), Positives = 18/20 (90%)
 Frame = +1

Query: 1   PCMEIMKRNIDDYEEQLVKL 60
           PCM+IMKRNID YEEQL KL
Sbjct: 55  PCMDIMKRNIDGYEEQLQKL 74


>SB_19865| Best HMM Match : cNMP_binding (HMM E-Value=8.3e-39)
          Length = 373

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = +1

Query: 1   PCMEIMKRNIDDYEEQLVKL 60
           PC EIMKRN  +YEEQ  KL
Sbjct: 350 PCKEIMKRNAKEYEEQKKKL 369


>SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -3

Query: 512 YWYRNFCASRGRQTESLNFIKHFQFVL 432
           YWY NF A R   T SL F  +F   L
Sbjct: 566 YWYTNFSAERKTPTTSLKFSLNFDVFL 592


>SB_58603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 475 KQNH*ISLNTS-NLCYTRQYKKNKLNTKTPL 386
           K+ H    N S N    RQ K+N+LNTKT L
Sbjct: 297 KREHVTKANDSYNAALNRQRKRNRLNTKTKL 327


>SB_32300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 676

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 16  MKRNIDDYEEQLVKLFGDKSNLTDVR*TADARTRNLLSSTQREGRHV 156
           M++  +DYE ++  L  D S   D+  +  A  R+ L   Q++ +H+
Sbjct: 221 MEKLSNDYEARITNLKDDHSKALDIAASRSASARDDLDQLQQQLKHI 267


>SB_9006| Best HMM Match : WSC (HMM E-Value=0.85)
          Length = 441

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 409 YFFYIVACSTNWKCLMKFNDSVCLPR 486
           Y +YI +CS N++ +  ++D + +PR
Sbjct: 95  YIYYITSCSVNFEPIGCYHDDMIIPR 120


>SB_17340| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 890

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -3

Query: 200 LGSMKWGHTDITAVNTWRPSRCVEDRRLRVRASAVHRTSVRL-LLSPNNLTSCSS*SSML 24
           + +  W    I +V   R S  V    L +RAS VHR  V   LL P  L + S+ SS+L
Sbjct: 312 ISNYAWRLRSIVSVLKNRSSIKVRIPMLVIRASNVHRKRVNFPLLKPTVLRAISNMSSLL 371


>SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2644

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -2

Query: 195  FNEMGTHRHYGGEHVAPLTLRGR*EVACSRVGRSSHVGEVALVPKQL 55
            ++  GTH +     + P+T  G  ++    V  SS+ G++AL   QL
Sbjct: 1215 WSRSGTHGNRWNNAIVPITQSGTFQIVFEGVRGSSYKGDIALDDVQL 1261


>SB_31661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 864

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 109 RTRNLLSSTQREGRHVFTAVMSVCPHFIEPSSY 207
           +T+ L    +   RHVF  ++ +CP +++  SY
Sbjct: 482 KTKYLTEQLRGPFRHVFEYIVLICPTYVKNKSY 514


>SB_3818| Best HMM Match : Pox_A32 (HMM E-Value=0.022)
          Length = 766

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 109 RTRNLLSSTQREGRHVFTAVMSVCPHFIEPSSY 207
           +T+ L    +   RHVF  ++ +CP + E  SY
Sbjct: 482 KTKYLTEQLRGPFRHVFEYIVLICPTYAENKSY 514


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,225,160
Number of Sequences: 59808
Number of extensions: 364728
Number of successful extensions: 928
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)