Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31521
         (793 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69860.1 68414.m08040 proton-dependent oligopeptide transport...    30   2.0  
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel...    30   2.0  
At3g19780.1 68416.m02504 expressed protein                             28   6.2  

>At1g69860.1 68414.m08040 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 555

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
 Frame = -3

Query: 572 DCVINYVSALSTLRKCFFCW----YWYRNF 495
           DC   +++ALSTL   FF W    Y YRN+
Sbjct: 522 DCFYYFIAALSTLNFIFFFWCARRYRYRNY 551


>At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-related
            similar to BEIGE (GI:3928547) [Rattus norvegicus];
            Similar to gb|U70015 lysosomal trafficking regulator from
            Mus musculus and contains 2 Pfam PF00400 WD-40, G-beta
            repeats. ESTs gb|T43386 and gb|AA395236 come from this
            gene
          Length = 3601

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = -3

Query: 524  FFCWYWYRNFCASRGRQTES 465
            F CW+ +RNF  ++G+++E+
Sbjct: 1091 FVCWFQFRNFLTTQGKESEA 1110


>At3g19780.1 68416.m02504 expressed protein
          Length = 1014

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 54  QVVWGQEQPHRRAMNGRRANTQPPIFHAT*GAPRVHRRNVCVS 182
           +VV    +P  R +N  + N+Q P  H+   AP+V    V V+
Sbjct: 822 EVVLRNREPAEREVNHDQVNSQSPPIHSLTNAPQVKTGTVLVA 864


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,706,455
Number of Sequences: 28952
Number of extensions: 241395
Number of successful extensions: 486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)