Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31520
         (421 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0AMD6 Cluster: Complete genome; n=1; Listeria welshime...    33   3.1  
UniRef50_Q4SZR1 Cluster: Chromosome undetermined SCAF11541, whol...    32   4.1  
UniRef50_A3LWY2 Cluster: Zinc finger transcription factor; n=2; ...    32   4.1  
UniRef50_Q4SH16 Cluster: Chromosome 8 SCAF14587, whole genome sh...    32   5.4  
UniRef50_Q54ZP6 Cluster: Putative uncharacterized protein; n=2; ...    31   7.2  

>UniRef50_A0AMD6 Cluster: Complete genome; n=1; Listeria welshimeri
           serovar 6b str. SLCC5334|Rep: Complete genome - Listeria
           welshimeri serovar 6b (strain ATCC 35897 / DSM 20650
           /SLCC5334)
          Length = 42

 Score = 32.7 bits (71), Expect = 3.1
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = -1

Query: 262 KFSVMTILKLMRSRKPTNIFLKKTIIFD 179
           K S++  +KL++S+K TN+ LK+ II+D
Sbjct: 14  KRSILPYIKLLKSKKVTNLHLKERIIYD 41


>UniRef50_Q4SZR1 Cluster: Chromosome undetermined SCAF11541, whole
           genome shotgun sequence; n=2; Tetraodontidae|Rep:
           Chromosome undetermined SCAF11541, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 444

 Score = 32.3 bits (70), Expect = 4.1
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 70  CGVSGELFWSFNSLIRIHFNST-PDSKSICMY 162
           CGVSG ++  FN  + + F+S  P   S+C+Y
Sbjct: 202 CGVSGSVWVHFNHTVSVQFHSPWPGRNSLCLY 233


>UniRef50_A3LWY2 Cluster: Zinc finger transcription factor; n=2;
           Pichia|Rep: Zinc finger transcription factor - Pichia
           stipitis (Yeast)
          Length = 520

 Score = 32.3 bits (70), Expect = 4.1
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
 Frame = -1

Query: 391 LFRGFQTVYVKSIKNDYRITD*HSLCHVI**E---HNRSAEV*RSLKFSVMTILKLMRSR 221
           L++  Q +Y  +I N       HSL H +      +N  AE  ++ + S++ ILKL+ S 
Sbjct: 287 LYQSVQDIYTNNIMNFDYPQSYHSLTHFLKKRFSGNNLPAEQKQAKRQSLLVILKLIASY 346

Query: 220 KPTNIFLKKTII--FDSLVKENTYK 152
           +PT I   K+++  +D    E T++
Sbjct: 347 RPTFISAHKSLLKPYDLQFLEMTFQ 371


>UniRef50_Q4SH16 Cluster: Chromosome 8 SCAF14587, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 8
           SCAF14587, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 2317

 Score = 31.9 bits (69), Expect = 5.4
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 52  SRTVSGCGVSGELFWSFNSLIRIHFNSTPDSKSIC-MYF 165
           SRT + CGV   LF+ + S +RIH   TP   + C +YF
Sbjct: 5   SRTCNKCGVKFALFYQYVSHMRIHTGVTPYKCNGCGVYF 43


>UniRef50_Q54ZP6 Cluster: Putative uncharacterized protein; n=2;
           Dictyostelium discoideum|Rep: Putative uncharacterized
           protein - Dictyostelium discoideum AX4
          Length = 732

 Score = 31.5 bits (68), Expect = 7.2
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
 Frame = -1

Query: 286 SAEV*RSLKFSVMTILKLMRSRKPTNIFLKKTIIFDSLVKENTYKLTSNQ-ECY*NGSVL 110
           S EV  +    + T + LM+S K  N+FL  +  F SLVKE    + S+  E + N ++ 
Sbjct: 105 SIEVISNRNNKLETTIGLMKSYKVMNLFLHPSPPFISLVKEKLSVIISSLFEIFENENI- 163

Query: 109 NY*NSRKVHPTLHNLTQCVT 50
           N   S +  P +H+ ++ ++
Sbjct: 164 NLDGSNRSLPNIHHFSKVMS 183


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 362,139,008
Number of Sequences: 1657284
Number of extensions: 5981715
Number of successful extensions: 12794
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12792
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 19389441554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)