Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31520
         (421 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom...    24   8.4  
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa...    24   8.4  

>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 7/29 (24%), Positives = 19/29 (65%)
 Frame = -3

Query: 266 SKVFGDDDIEVNEVKKTDKYLFKKNDYIR 180
           +++  ++D+E  ++ + D Y+   N+Y+R
Sbjct: 373 TRIINEEDLEKLDLSECDIYMLGPNNYMR 401


>SPBC776.12c |hsk1||serine/threonine protein kinase
           Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -3

Query: 275 LTESKVFGDDDIEVNEVKKTDKYLFKKNDYIR*SS*RKYIQID 147
           L ES  FG + I VNE  +  KY+  K  Y   S  R Y +++
Sbjct: 104 LKESS-FGKEKIPVNEDSRKPKYVAIKKIYATSSPARIYNELE 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,593,654
Number of Sequences: 5004
Number of extensions: 28482
Number of successful extensions: 56
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)