Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31520
         (421 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35019| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)              27   4.8  
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)       27   6.3  
SB_55784| Best HMM Match : CUB (HMM E-Value=3.1e-25)                   27   6.3  
SB_36794| Best HMM Match : FTHFS (HMM E-Value=0)                       27   8.3  

>SB_35019| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
          Length = 412

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 259 FSVMTILKLMRSRKPTNIFLKKTIIFDSLV 170
           F V TI K+ R + PTN+      +FD +V
Sbjct: 56  FVVRTIFKVPRMKTPTNMMFVNMALFDIIV 85


>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
          Length = 893

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -3

Query: 275 LTESKVFGDDDIEVNEVKKTDKYLFKKN 192
           LTE  V GD    V   K  D YLFK+N
Sbjct: 100 LTEEDVLGDVASNVATHKARDVYLFKRN 127


>SB_55784| Best HMM Match : CUB (HMM E-Value=3.1e-25)
          Length = 418

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 55  RTVSGCGVSGELFWSFNS-LIRIHFNSTPDSKSICMYF 165
           R +   G + +L  SF++ L+  HF+ + DS S+C+ F
Sbjct: 3   RIIFQSGFNNKLTQSFSAKLVGPHFSRSVDSSSVCLRF 40


>SB_36794| Best HMM Match : FTHFS (HMM E-Value=0)
          Length = 388

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 287 ER*SLTESKVFGDDDIEVNEVKKTDKYLFKKNDY 186
           E+  +   KV+G DDIE++E  +T    +KK  +
Sbjct: 290 EKIRVIAQKVYGSDDIELSEEAQTKIGRYKKQGF 323


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,410,468
Number of Sequences: 59808
Number of extensions: 196074
Number of successful extensions: 395
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)