Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31520
         (421 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032630-9|CAA21565.1|  369|Caenorhabditis elegans Hypothetical ...    28   2.4  
AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine re...    28   3.1  
AF067211-4|AAC16995.1|  532|Caenorhabditis elegans Hypothetical ...    27   5.5  

>AL032630-9|CAA21565.1|  369|Caenorhabditis elegans Hypothetical
           protein Y62H9A.9 protein.
          Length = 369

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 235 LMRSRKPTNIFLKKTIIFDSLVKENTY-KLTSNQEC 131
           L+R+ +PT+I+ KK ++F    +  TY  L  N  C
Sbjct: 149 LVRTNRPTDIYKKKYLLFPVSFRAETYCTLVVNPHC 184


>AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 66 protein.
          Length = 286

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 306 MTWHSEC*SVIR*SFLIDLTYTV*NPRNKVF 398
           +TW SE  S+I   F ID+ YT   P NK++
Sbjct: 36  ITWKSEF-SLIYTRFAIDIVYTFFVPHNKIY 65


>AF067211-4|AAC16995.1|  532|Caenorhabditis elegans Hypothetical
           protein B0205.9 protein.
          Length = 532

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = -3

Query: 419 TIKLELQENLISWISN-GVC*INQKRLPYNRLTLTVPRHLVRT*SER*SLTESKVFGDDD 243
           T++L+ Q  ++ + SN G+  + +K     R   T   +   T ++R  +TE+++   DD
Sbjct: 206 TVQLDDQRRIVRYASNDGMIELEEKTSGVKRRRSTKSSN---TPTKRREITENELSDTDD 262

Query: 242 IEVNEV 225
           +EV E+
Sbjct: 263 VEVMEI 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,653,796
Number of Sequences: 27780
Number of extensions: 154510
Number of successful extensions: 261
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)