Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31520
         (421 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44240.1 68416.m04747 CCR4-NOT transcription complex protein,...    27   3.9  
At5g19740.1 68418.m02347 peptidase M28 family protein ileal pept...    26   9.0  
At4g39952.1 68417.m05658 pentatricopeptide (PPR) repeat-containi...    26   9.0  

>At3g44240.1 68416.m04747 CCR4-NOT transcription complex protein,
          putative similar to SWISS-PROT:Q60809 CCR4-NOT
          transcription complex, subunit 7 (CCR4-associated
          factor 1, (CAF1) [Mus musculus]
          Length = 239

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 80 DTPQPDTVRDTLAYIPDRSRYNDLFF 3
          DT  P T+R+T  +  D  RY D+ F
Sbjct: 17 DTEFPSTLRETTQHATDEERYMDMSF 42


>At5g19740.1 68418.m02347 peptidase M28 family protein ileal
           peptidase I100 - Rattus norvegicus, EMBL:AF009921;
           contains Pfam profiles PF04389: Peptidase family M28,
           PF02225: PA domain
          Length = 681

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +1

Query: 1   EKNRSLYRDRSGMYANVSRTVSGCGVSGELFWSFNSLIRIHFNST--PDSKSICMY 162
           E+NR +   R+  Y NV   VSG G         + LI++       PD+ +  +Y
Sbjct: 392 EENREMLSSRAVAYLNVDCAVSGPGFHASATPQLDELIKVAAQEVRDPDNATQTIY 447


>At4g39952.1 68417.m05658 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 726

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +1

Query: 100 FNSLIRIHFNSTPDSKSICMYF 165
           +NS+I+ HF++   ++S+C +F
Sbjct: 93  WNSIIKAHFSNGDYARSLCFFF 114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,853,707
Number of Sequences: 28952
Number of extensions: 133295
Number of successful extensions: 303
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)