Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31519
         (672 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   6.9  
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    21   9.2  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   9.2  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 672 STITLFSRQCPRKMIIKSQVY 610
           S IT+  +  P+KM+  S++Y
Sbjct: 147 SLITMAIQNSPQKMLTLSEIY 167


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 6/29 (20%)
 Frame = -1

Query: 378 FTTRLINVDPMRIVSNKQ------NCIFE 310
           +TTR  NVD  RI+ +K+      NC+ E
Sbjct: 34  YTTRYDNVDVDRILHSKRLLLNYINCLLE 62


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +1

Query: 487 TRNMSVILKIEFRFLELNFNEHS 555
           T   S++L+ +FR +  N N+++
Sbjct: 143 TERSSLVLRNDFRLMSNNLNKNN 165


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,029
Number of Sequences: 336
Number of extensions: 3200
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)