Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31519
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.14c |cox17||metallochaperone Cox17|Schizosaccharomyces ...    66   3e-12
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    26   5.7  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    25   7.5  

>SPBC26H8.14c |cox17||metallochaperone Cox17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 70

 Score = 66.5 bits (155), Expect = 3e-12
 Identities = 29/50 (58%), Positives = 36/50 (72%), Gaps = 2/50 (4%)
 Frame = +1

Query: 16  EKPKLKPCCACPETKRARDACIIE--NGEENCGPLIEEHKACMRKMGFNI 159
           EKPK  PCCACPETK+ARDAC+++  NG   C  LIE HK CM + G+ +
Sbjct: 23  EKPK--PCCACPETKQARDACMLQSSNGPIECAKLIEAHKKCMAQYGYEV 70


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 275 IINLFFFFHIGTDLLTNKQCCRRYFVANNTLIEN 174
           I +L   F +G D+LT + C R   +ANN  + N
Sbjct: 570 IPSLHHAFFVG-DILTKRDCLRLQVLANNVNVVN 602


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 99  LFSIFYNACIACSFCFRASTARL*FRFL 16
           LF   Y + + CS C++ STA   F +L
Sbjct: 431 LFQGMYKSTLECSICYQKSTAFDPFMYL 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,666,269
Number of Sequences: 5004
Number of extensions: 52112
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)