Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31519
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    24   1.1  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    24   1.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   1.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   1.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   1.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   3.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.5  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               21   8.1  

>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 203 STYDSIAYLSANQFQYEKKKTD 268
           +T+D     + N F YEK+ TD
Sbjct: 220 TTFDDYLDYAINPFDYEKRSTD 241


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 203 STYDSIAYLSANQFQYEKKKTD 268
           +T+D     + N F YEK+ TD
Sbjct: 220 TTFDDYLDYAINPFDYEKRSTD 241


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 10  DVEKPKLKPCCACPETKRARDACIIENGEENCGPLIEEHKA 132
           D+EK K     A     R +  C +E  +++C   I+E+ A
Sbjct: 395 DLEKCKALTRAAYSRDVRPKYDCTLEKSQDDCLKAIKENNA 435


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 10  DVEKPKLKPCCACPETKRARDACIIENGEENCGPLIEEHKA 132
           D+EK K     A     R +  C +E  +++C   I+E+ A
Sbjct: 395 DLEKCKALTRAAYSRDVRPKYDCTLEKSQDDCLKAIKENNA 435


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 10  DVEKPKLKPCCACPETKRARDACIIENGEENCGPLIEEHKA 132
           D+EK K     A     R +  C +E  +++C   I+E+ A
Sbjct: 395 DLEKCKALTRAAYSRDVRPKYDCTLEKSQDDCLKAIKENNA 435


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 101 FSSPFSIMHASRAL 60
           FS  F I+HA RAL
Sbjct: 192 FSESFQILHAGRAL 205


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 101 FSSPFSIMHASRAL 60
           FS  F I+HA RAL
Sbjct: 192 FSESFQILHAGRAL 205


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 670 NYNIVFQTMSKKNDYKVPSLSLHLVTSQLL 581
           NYN + + +S  ND  V  L L L  SQL+
Sbjct: 31  NYNRLIRPVSNNNDTVVVKLGLRL--SQLI 58


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 101 FSSPFSIMHASRAL 60
           FS  F I+HA RAL
Sbjct: 192 FSESFQILHAGRAL 205


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 518 SIFKMTLMFLVHQII*SCSQIQTAVC*RNCK 426
           S+  +T  F+   +  +C   +TA+C R C+
Sbjct: 13  SVILITSYFVTPVMPCNCKAPETALCARRCQ 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,449
Number of Sequences: 438
Number of extensions: 3478
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)