Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31519
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15352.1 68416.m01943 cytochrome c oxidase copper chaperone-r...    70   1e-12
At1g53030.1 68414.m06003 cytochrome c oxidase copper chaperone f...    65   5e-11
At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative ...    27   8.6  

>At3g15352.1 68416.m01943 cytochrome c oxidase copper
           chaperone-related contains similarity to cytochrome c
           oxidase copper chaperone [Mus musculus]
           SWISS-PROT:P56394
          Length = 74

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 27/47 (57%), Positives = 34/47 (72%)
 Frame = +1

Query: 19  KPKLKPCCACPETKRARDACIIENGEENCGPLIEEHKACMRKMGFNI 159
           KPK + CCACP+TK+ RD CI+E+GE  C   IE HK C+R  GFN+
Sbjct: 28  KPKKRICCACPDTKKLRDECIVEHGESACTKWIEAHKICLRAEGFNV 74


>At1g53030.1 68414.m06003 cytochrome c oxidase copper chaperone
           family protein contains Pfam domian, PF05051: Cytochrome
           C oxidase copper chaperone (COX17)
          Length = 72

 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 25/47 (53%), Positives = 32/47 (68%)
 Frame = +1

Query: 19  KPKLKPCCACPETKRARDACIIENGEENCGPLIEEHKACMRKMGFNI 159
           KPK + CCACP+TK+ RD CI+E+GE  C   IE H  C+R  GF +
Sbjct: 26  KPKKRICCACPDTKKLRDECIVEHGESACTKWIEAHILCLRSEGFKV 72


>At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative
           similar to DNA-binding protein DF1 [Pisum sativum]
           GI:13646986
          Length = 603

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +1

Query: 85  ENGEENCGPLIEEHKACMRKMGFN 156
           ENG +  GPL EE  A MR++GFN
Sbjct: 430 ENGPK--GPLWEEISAGMRRLGFN 451


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,131,602
Number of Sequences: 28952
Number of extensions: 240719
Number of successful extensions: 438
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)