Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31518
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    29   0.58 
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    28   1.8  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    27   3.1  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    27   4.1  
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    27   4.1  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    27   4.1  
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    26   5.4  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   9.5  

>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -3

Query: 398 SDQDMNGIASPS---RPAEIMPLSQRTQKPRYSP 306
           SD ++ G+  P    +PA  +PLS+R+  P Y+P
Sbjct: 30  SDPELIGLLKPDNVDKPANSIPLSKRSTSPSYAP 63



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 550 YRGPHNCHVSLTTHPAEVDPMYEIIIGG 633
           Y+G  N   + TT+P E  P+ E+I GG
Sbjct: 395 YQGYGNASNTTTTNPLEPYPIIELIDGG 422


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 556 GPHNCHVSLTTHPAEVDPMYEIIIGGWENTQSVIRYCRQK 675
           GPH+    L +HP  +  + +I +  + + Q V+ YC  K
Sbjct: 142 GPHHIQELLDSHPKIIPCVNQIELHPFCSQQKVVDYCESK 181


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +1

Query: 460 WKIEDGAEFDTPDRLEYKFGPVASGSLEFDY----RGPHNCHVSLTTHPAEVDPMYEII 624
           + I+D A++D PD ++Y      SG  +  Y    +G      SL+ HP   D +  +I
Sbjct: 190 FSIDDFAQYDIPDTIDYIL--KTSGQTKLTYIGFSQGTAQAFASLSIHPLLNDKINSLI 246


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = -2

Query: 357 SGDNAAIPTNPKT-----TIFPSVKNSGAFNFNLIGLGSIFPDDALSVSPASNHHLI 202
           S +   IP+ P T      +  + KNS A + +L  +     +D  S+SPA +H +I
Sbjct: 449 SSNKRLIPSTPPTKKPINAVLDAAKNSAAKDLHLAKMKLNNKNDESSLSPAKSHAVI 505


>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -3

Query: 374 ASPSRPAEIMPLSQRTQKPRYSPPLRIPGLSISTLSGLVLFFLMTLLAFPQPPIITSYIG 195
           + PS+P + +P+S        +PP R   +S+   S L  +    L +FP P ++  Y  
Sbjct: 160 SKPSKPRKKVPVSHPLPP---TPPSREEHVSVPRESSLFTYEDDPLPSFPSPYMVDDYYT 216

Query: 194 SD 189
            D
Sbjct: 217 QD 218


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = -3

Query: 404 SGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSPPLRIPGLSISTLSG-----LVLFFLMT 240
           S +  D  G  S   P+E+MPL  + +      P  +PG +++  +      L  FF+ +
Sbjct: 214 SPTSGDQTGNISFGLPSEVMPLFPQIEAVYEMYPHSLPGFNVNITTNSKDTRLARFFVSS 273

Query: 239 LLAF 228
           L+ F
Sbjct: 274 LIPF 277


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 411 ERFGIRPGYEWNSFTLASSGDNAAIP 334
           E+ G R GY+ +S   ASS  N+ IP
Sbjct: 155 EKMGYRGGYQMHSTPWASSPRNSTIP 180


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 323 KPRYSPPLRIPGLSISTLSGLVLFFLMTLLAFPQPPIITSYIGSD 189
           K  Y+P   I GL++ TLS     +LM L+  P   ++ +  G D
Sbjct: 50  KVLYAPRTTIEGLNLPTLSSSYYKWLMDLVNIPD-DVVQNCAGLD 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,439,971
Number of Sequences: 5004
Number of extensions: 78668
Number of successful extensions: 240
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)