Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31515
(677 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54785| Best HMM Match : No HMM Matches (HMM E-Value=.) 90 1e-18
SB_11216| Best HMM Match : GILT (HMM E-Value=6.7e-10) 89 2e-18
SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22) 31 1.1
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_20789| Best HMM Match : GATA (HMM E-Value=7.4) 29 2.6
SB_13201| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041) 28 6.0
SB_1245| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_37181| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7) 28 8.0
SB_36147| Best HMM Match : Keratin_B2 (HMM E-Value=1.7) 28 8.0
SB_35674| Best HMM Match : SH2 (HMM E-Value=0) 28 8.0
SB_26480| Best HMM Match : EGF (HMM E-Value=0) 28 8.0
>SB_54785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 211
Score = 90.2 bits (214), Expect = 1e-18
Identities = 48/171 (28%), Positives = 89/171 (52%), Gaps = 4/171 (2%)
Frame = +2
Query: 170 VKIAVYYESLCPDSKKFITTQLAPVWRDFRGLVKVKMVPYGKSTHDKVDGKWSFICHHGA 349
V I++YYES+C + I QL P ++ ++ + +VPYG + + KW F C HG
Sbjct: 27 VAISLYYESMCGGCRDMIRDQLYPTFQKVGSIMDITLVPYGNAQEYRYGNKWVFNCQHGQ 86
Query: 350 DECYGNKVQACVLKD-RNLQDTEKMEIVIC---LMNQTSPDKSLDTCLTQVDKMSESDKL 517
EC GN ++ C + +N+ + + C ++ +P + C Q+ + +
Sbjct: 87 GECEGNIIEVCAINVLKNI--SAYFPFIHCFEQFISSYNPSSTAQYCAKQLG--IDYAPI 142
Query: 518 KRCASSEQGDNLLASYGDKTDAVMRPLAFVPTVIINEKYDKDVETQAFENL 670
++CAS QG+ L G +TDA++ +VP V +N ++ ++++ QA N+
Sbjct: 143 EKCASGLQGNELEHEMGVETDALVPRHNYVPWVTLNGEHTEEIQNQATFNM 193
>SB_11216| Best HMM Match : GILT (HMM E-Value=6.7e-10)
Length = 311
Score = 89.4 bits (212), Expect = 2e-18
Identities = 47/175 (26%), Positives = 84/175 (48%)
Frame = +2
Query: 146 KKKTEDHKVKIAVYYESLCPDSKKFITTQLAPVWRDFRGLVKVKMVPYGKSTHDKVDGKW 325
K+ + KVK+AVYY S P+ ++F+ QL P ++ + MVP+G K +
Sbjct: 20 KQTKKAEKVKLAVYYNSKNPEFRRFMVAQLYPTSNKIPNILDISMVPFGDGKEIKAKSGF 79
Query: 326 SFICHHGADECYGNKVQACVLKDRNLQDTEKMEIVICLMNQTSPDKSLDTCLTQVDKMSE 505
+ C +GA+EC N +QAC + N + + S DK C Q+ +
Sbjct: 80 QYYCTNGAEECLENLIQACAVATENNPEILTSFVGCLSYYDGSVDKIAKYCSNQI---KD 136
Query: 506 SDKLKRCASSEQGDNLLASYGDKTDAVMRPLAFVPTVIINEKYDKDVETQAFENL 670
+K++ C + QG ++ KT + ++ P + +N ++ + ++ QA ENL
Sbjct: 137 YEKVEYCLKNTQGLEVMHYMAKKTRGLQPKMSHSPWITVNGEHSEFIQQQAMENL 191
>SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)
Length = 1421
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 357 HSSAPWWQMNDHFPSTLS 304
HS+ +W NDHFPS+LS
Sbjct: 585 HSNHRYWYYNDHFPSSLS 602
>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1789
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/64 (25%), Positives = 32/64 (50%)
Frame = +2
Query: 383 VLKDRNLQDTEKMEIVICLMNQTSPDKSLDTCLTQVDKMSESDKLKRCASSEQGDNLLAS 562
V + R+L+D I + + S + + + + +E KL+ CA ++ GD+++
Sbjct: 1155 VTEVRSLKDHISCAIKCLVFHNLSQLRGITREICGLRGFAEKAKLRACAEAQSGDSVVFH 1214
Query: 563 YGDK 574
Y DK
Sbjct: 1215 YDDK 1218
>SB_20789| Best HMM Match : GATA (HMM E-Value=7.4)
Length = 471
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 310 LVVRALPIRDHFDFDKSSEVPPDGSQLRRYKLLAVRTKGF 191
+ ++A+ R HFDF + PD S +R+ L +R G+
Sbjct: 209 IAIKAMKWRSHFDFLSDKSIVPD-SFMRKILLKGIRRHGY 247
>SB_13201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 383
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 43 FQKNHIIVFFPDIKQQDEDSPAGLLSDAALLCRGEEENRRP 165
F++ + VFF D+ + E +++ LL G E +RRP
Sbjct: 10 FRRRSVTVFFDDLLSESERQSGDNITNNELLPVGYERDRRP 50
>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4554
Score = 28.3 bits (60), Expect = 6.0
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = +2
Query: 305 DKVDGKWSFICHHGADECYGNKVQACVLKDRNLQDTEKMEIVI-CLMNQTSPD---KSLD 472
++ D KW HG DE +Q C L +R + + + EI + ++ P+ SLD
Sbjct: 4004 EEQDNKWELFIKHGTDE-NPLHIQLCFLINRLIGNHVEKEIYLQAMLACRVPEDILPSLD 4062
Query: 473 TCLTQVDKMSESDK 514
C D +S SDK
Sbjct: 4063 RCGVAQDLLS-SDK 4075
>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
Length = 942
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 412 GEDGDCNMPHEPDQPRQV 465
GE+G+C EP+ PRQ+
Sbjct: 173 GENGECQYSREPEPPRQI 190
>SB_1245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 370 GASLRPEGPQPPGHGEDGDCNMPHEPDQPRQVFGHVLNSSGQDVGV 507
G SL P +GD +P D PR++ H+L + D G+
Sbjct: 11 GRSLNPAIDVGQSRAAEGDYKIPSLRDIPREMNVHILKNMRNDKGI 56
>SB_37181| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 327 DHFPSTLSCVLFPYGTILTLTSPL 256
D FP SC FPY ++++ SP+
Sbjct: 96 DVFPIACSCRCFPYHVLMSMCSPI 119
>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4865
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 188 YESLCPDSKKFITTQLAPVWRDFRGLVKVKMVP 286
+ + PD+ + I +L P++ D+ ++KVK+ P
Sbjct: 3409 FRVIAPDTIRDINDELVPLFDDYHKVMKVKLSP 3441
>SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)
Length = 540
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 327 DHFPSTLSCVLFPYGTILTLTSPL 256
D FP SC FPY ++++ SP+
Sbjct: 246 DVFPIACSCRCFPYHVLMSMCSPI 269
>SB_36147| Best HMM Match : Keratin_B2 (HMM E-Value=1.7)
Length = 533
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 327 DHFPSTLSCVLFPYGTILTLTSPL 256
D FP SC FPY ++++ SP+
Sbjct: 54 DVFPIACSCRCFPYHVLMSMCSPI 77
>SB_35674| Best HMM Match : SH2 (HMM E-Value=0)
Length = 871
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 500 SESDKLKRCASSEQGDNLLASYGDK 574
+E KL+ CA ++ GD+++ Y DK
Sbjct: 17 AEKAKLRACAEAQSGDSVVFHYDDK 41
>SB_26480| Best HMM Match : EGF (HMM E-Value=0)
Length = 1772
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 531 PVNKETICSRRTVIKRML**DLSRSCPPLLLTRNTTK 641
P E +C+ R + + SRSCPP ++ TTK
Sbjct: 417 PAGNENLCNFRVRVNDVEPPTCSRSCPPDIIKELTTK 453
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,906,072
Number of Sequences: 59808
Number of extensions: 523905
Number of successful extensions: 1511
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1510
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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