Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31515
(677 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g12870.1 68417.m02015 gamma interferon responsive lysosomal t... 82 3e-16
At1g07080.1 68414.m00754 gamma interferon responsive lysosomal t... 75 4e-14
At4g12960.1 68417.m02025 gamma interferon responsive lysosomal t... 73 2e-13
At4g12890.1 68417.m02017 gamma interferon responsive lysosomal t... 70 2e-12
At4g12900.1 68417.m02018 gamma interferon responsive lysosomal t... 69 4e-12
At5g01580.1 68418.m00073 gamma interferon responsive lysosomal t... 61 6e-10
At2g44580.1 68415.m05548 zinc finger (C3HC4-type RING finger) fa... 38 0.008
At3g23980.1 68416.m03012 dentin sialophosphoprotein-related cont... 30 1.2
At4g38350.1 68417.m05422 patched family protein similar to SP|O1... 30 1.6
At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PG... 30 1.6
At1g42470.1 68414.m04897 patched family protein similar to SP|O1... 29 2.1
At1g15130.1 68414.m01807 hydroxyproline-rich glycoprotein family... 29 2.1
At5g43130.1 68418.m05265 transcription initiation factor IID (TF... 29 2.8
At4g03420.1 68417.m00469 expressed protein 29 3.7
At1g06490.1 68414.m00688 glycosyl transferase family 48 protein ... 29 3.7
At3g59140.1 68416.m06593 ABC transporter family protein putative... 28 4.9
At3g18290.1 68416.m02326 zinc finger protein-related weak alignm... 28 4.9
At2g37730.1 68415.m04627 fringe-related protein similarity to pr... 28 4.9
At5g39440.1 68418.m04777 Snf1-related protein kinase, putative s... 28 6.5
At5g38260.1 68418.m04612 serine/threonine protein kinase, putati... 28 6.5
At5g51750.1 68418.m06417 subtilase family protein similar to sub... 27 8.6
At4g00416.1 68417.m00056 methyl-CpG-binding domain-containing pr... 27 8.6
At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR... 27 8.6
>At4g12870.1 68417.m02015 gamma interferon responsive lysosomal
thiol reductase family protein / GILT family protein
similar to SP|P13284 Gamma-interferon inducible
lysosomal thiol reductase precursor {Homo sapiens};
contains Pfam profile PF03227: Gamma interferon
inducible lysosomal thiol reductase (GILT)
Length = 229
Score = 82.2 bits (194), Expect = 3e-16
Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 3/179 (1%)
Frame = +2
Query: 104 RLVCFLMLLCYVVAKKKT--EDHKVKIAVYYESLCPDSKKFITTQLAPVW-RDFRGLVKV 274
+LV F + + + K E KV++ +YYESLCP + FI +L V+ D + V
Sbjct: 9 KLVFFACFVLFTFSHKLVTGESDKVELNLYYESLCPGCQSFIVDELVKVFDSDLDTITDV 68
Query: 275 KMVPYGKSTHDKVDGKWSFICHHGADECYGNKVQACVLKDRNLQDTEKMEIVICLMNQTS 454
K+VP+G + KV + IC HG +EC N ++ACV+ + + + C+ N T
Sbjct: 69 KLVPFG---YAKVSNNLTVICQHGEEECKLNALEACVINTLP-NPKSQYKFIRCVENNT- 123
Query: 455 PDKSLDTCLTQVDKMSESDKLKRCASSEQGDNLLASYGDKTDAVMRPLAFVPTVIINEK 631
D +CL + C +S+ L+ Y +T ++ FVP V IN K
Sbjct: 124 -DNWESSCL---KGYGNEKAINDCYNSDLSKKLILGYAKQTSSLKPKHEFVPWVTINSK 178
>At1g07080.1 68414.m00754 gamma interferon responsive lysosomal
thiol reductase family protein / GILT family protein
similar to SP|P13284 Gamma-interferon inducible
lysosomal thiol reductase precursor {Homo sapiens};
contains Pfam profile PF03227: Gamma interferon
inducible lysosomal thiol reductase (GILT)
Length = 265
Score = 74.9 bits (176), Expect = 4e-14
Identities = 47/155 (30%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
Frame = +2
Query: 167 KVKIAVYYESLCPDSKKFITTQLAPVWR-DFRGLVKVKMVPYGKSTHDKVDGKWSFICHH 343
KV + +YYESLCP FI LA ++ D +V + + P+G +T + D + +C H
Sbjct: 38 KVSVGLYYESLCPYCSSFIVNHLAKLFEDDLISIVDLHLSPWG-NTKLRSDNV-TAVCQH 95
Query: 344 GADECYGNKVQACVLKDRNLQDTEKMEIVICLMNQTSPDKSLDTCLTQVDKMSESDK-LK 520
GA EC+ + V+AC + D + ++ + C+ + K D T +K++ + K +
Sbjct: 96 GAFECFLDTVEACAI-DAWPKVSDHFPFIYCVEKLVTEHK-YDKWETCYEKLNLNSKPVA 153
Query: 521 RCASSEQGDNLLASYGDKTDAVMRPLAFVPTVIIN 625
C SS G+ L Y +T+A+ P +VP V+++
Sbjct: 154 DCLSSGHGNELALHYAAETNALQPPHKYVPWVVVD 188
>At4g12960.1 68417.m02025 gamma interferon responsive lysosomal
thiol reductase family protein / GILT family protein
similar to SP|P13284 Gamma-interferon inducible
lysosomal thiol reductase precursor {Homo sapiens};
contains Pfam profile PF03227: Gamma interferon
inducible lysosomal thiol reductase (GILT)
Length = 233
Score = 72.9 bits (171), Expect = 2e-13
Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 3/194 (1%)
Frame = +2
Query: 104 RLVCF--LMLLCYVVAKKKTEDHKVKIAVYYESLCPDSKKFITTQLAPVW-RDFRGLVKV 274
+LV F L+LL + + KVK+ +YYESLCP ++FI L ++ D + +
Sbjct: 8 KLVFFGCLLLLTFTDNLVAGKSGKVKLNLYYESLCPGCQEFIVDDLGKIFDYDLYTITDL 67
Query: 275 KMVPYGKSTHDKVDGKWSFICHHGADECYGNKVQACVLKDRNLQDTEKMEIVICLMNQTS 454
K+ P+G + ++ + C HG +EC N ++AC L+ Q ++ + C+ + T
Sbjct: 68 KLFPFGNA---ELSDNLTVTCQHGEEECKLNALEACALRTWPDQKSQ-YSFIRCVESDT- 122
Query: 455 PDKSLDTCLTQVDKMSESDKLKRCASSEQGDNLLASYGDKTDAVMRPLAFVPTVIINEKY 634
K ++C V + C + + L+ Y KT + P +VP V +N K
Sbjct: 123 --KGWESC---VKNSGREKAINDCYNGDLSRKLILGYATKTKNLKPPHEYVPWVTLNGK- 176
Query: 635 DKDVETQAFENLKA 676
D Q+ ++L A
Sbjct: 177 PLDDSVQSTDDLVA 190
>At4g12890.1 68417.m02017 gamma interferon responsive lysosomal
thiol reductase family protein / GILT family protein
similar to SP|P13284 Gamma-interferon inducible
lysosomal thiol reductase precursor {Homo sapiens};
contains Pfam profile PF03227: Gamma interferon
inducible lysosomal thiol reductase (GILT)
Length = 232
Score = 69.7 bits (163), Expect = 2e-12
Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 2/158 (1%)
Frame = +2
Query: 164 HKVKIAVYYESLCPDSKKFITTQLAPVW-RDFRGLVKVKMVPYGKSTHDKVDGKWSFICH 340
+KVKI +YYESLCP + FI L ++ D + +K+VP+G + + + C
Sbjct: 37 NKVKINLYYESLCPYCQNFIVDDLGKIFDSDLLKITDLKLVPFGNA---HISNNLTITCQ 93
Query: 341 HGADECYGNKVQACVLKDRNLQDTE-KMEIVICLMNQTSPDKSLDTCLTQVDKMSESDKL 517
HG +EC N ++AC + R L D + + + + C+ T+ ++C V K +
Sbjct: 94 HGEEECKLNALEACGI--RTLPDPKLQYKFIRCVEKDTN---EWESC---VKKSGREKAI 145
Query: 518 KRCASSEQGDNLLASYGDKTDAVMRPLAFVPTVIINEK 631
C + + L+ Y T ++ +VP V +N K
Sbjct: 146 NDCYNGDLSQKLILGYAKLTSSLKPKHEYVPWVTLNGK 183
>At4g12900.1 68417.m02018 gamma interferon responsive lysosomal
thiol reductase family protein / GILT family protein
similar to SP|P13284 Gamma-interferon inducible
lysosomal thiol reductase precursor {Homo sapiens};
contains Pfam profile PF03227: Gamma interferon
inducible lysosomal thiol reductase (GILT)
Length = 231
Score = 68.5 bits (160), Expect = 4e-12
Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 4/178 (2%)
Frame = +2
Query: 104 RLVCFLMLLCYVVAKKKT---EDHKVKIAVYYESLCPDSKKFITTQLAPVWR-DFRGLVK 271
+LV F LL + + E KVK+ +YYESLCP + FI L ++ D +
Sbjct: 12 KLVFFACLLLFTFSSHNLVAGESDKVKLNLYYESLCPSCQNFIVHHLGKIFNTDLHTITD 71
Query: 272 VKMVPYGKSTHDKVDGKWSFICHHGADECYGNKVQACVLKDRNLQDTEKMEIVICLMNQT 451
+K++P+G + V + C HG +EC N ++AC ++ Q + + C+ T
Sbjct: 72 LKLIPFGNA---HVSDDLTVTCQHGEEECKLNALEACAIRTWPNQRLH-YKFIRCVETNT 127
Query: 452 SPDKSLDTCLTQVDKMSESDKLKRCASSEQGDNLLASYGDKTDAVMRPLAFVPTVIIN 625
+ + ++C V K + C + + L+ Y ++T ++ +VP + +N
Sbjct: 128 N---AWESC---VKKYGGEKAINDCYNGDLSKELILGYANQTLSLKPEHKYVPWMTLN 179
>At5g01580.1 68418.m00073 gamma interferon responsive lysosomal
thiol reductase family protein / GILT family protein
similar to SP|P13284 Gamma-interferon inducible
lysosomal thiol reductase precursor {Homo sapiens};
contains Pfam profile PF03227: Gamma interferon
inducible lysosomal thiol reductase (GILT)
Length = 233
Score = 61.3 bits (142), Expect = 6e-10
Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 1/179 (0%)
Frame = +2
Query: 92 MKTLRLVCFLMLLCYVVAKKKTEDHKVKIAVYYESLCPDSKKFITTQLAPVWR-DFRGLV 268
M + + +C + + KV +++YYE+LCP +FI +L ++ +
Sbjct: 1 MASYQRLCITSCTIFFCLLSLSSSQKVTLSLYYEALCPFCAEFIVNRLPKIFETGLISSI 60
Query: 269 KVKMVPYGKSTHDKVDGKWSFICHHGADECYGNKVQACVLKDRNLQDTEKMEIVICLMNQ 448
+++VP+G + + DG + +C HG EC N + AC + D K I Q
Sbjct: 61 DLQLVPWGNAA-IRPDG--TILCQHGEAECALNAIHACAI--NAYPDVMKHFGYIYCTEQ 115
Query: 449 TSPDKSLDTCLTQVDKMSESDKLKRCASSEQGDNLLASYGDKTDAVMRPLAFVPTVIIN 625
+ L+ ++ + S C + G+ L Y ++T + FVP V++N
Sbjct: 116 LVLENKLEKWADCLEMVGLSRAAVDCYINGYGNQLEQRYAEETSELYPAHRFVPWVVVN 174
>At2g44580.1 68415.m05548 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 624
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +2
Query: 308 KVDGKWSFICHHGADECYGNKVQACVLKDRNLQDTEKMEIVICLMNQTSPDKSLDTCLTQ 487
++DG W I + D + CVLKD + D ++ E+V L+ P + CL
Sbjct: 194 EIDGFWRVIDENYLDVILRMLLHNCVLKDWSFDDLDEDEVVNALVADEFPSQLASHCLRV 253
Query: 488 V-DKMSESDKLK 520
K++E+DK K
Sbjct: 254 FGSKVNETDKWK 265
>At3g23980.1 68416.m03012 dentin sialophosphoprotein-related
contains weak similarity to Dentin sialophosphoprotein
precursor (Swiss-Prot:Q9NZW4) [Homo sapiens]
Length = 736
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 243 SGGTSEDLSKSKWSRMGRARTTRWMGNG 326
SGG S DLSK+ SR + +T +GNG
Sbjct: 525 SGGKSTDLSKNSTSRKNVSTSTEGLGNG 552
>At4g38350.1 68417.m05422 patched family protein similar to
SP|O15118 Niemann-Pick C1 protein precursor from Homo
sapiens (PID:g2276463); contains Pfam profile PF02460
Patched family
Length = 1064
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 110 VCFLMLLCYVVAKKKTEDHKVKIAVYYESLCPDSKKFITTQLAPVWR 250
V ++ LC + K E K+ V ES + KKF T L+P +R
Sbjct: 315 VAIVLALCSGLYNFKVETRPEKLWVGPESKAAEEKKFFDTHLSPFYR 361
>At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PGP1)
identical to P-glycoprotein GI:3849833 from [Arabidopsis
thaliana]; homologous to mammalian mdr gene,contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1286
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = -2
Query: 262 SSEVPPDGSQLRRYKLLAVRTKGFVIDRYFDLMVFGFLLRHDIAEQHQKANQPESLHLVV 83
S V DG +R+Y L A+R ++ + + +FG + +IA H+ A + E +
Sbjct: 1080 SGRVMIDGKDIRKYNLKAIRKHIAIVPQ--EPCLFGTTIYENIAYGHECATEAEIIQAAT 1137
Query: 82 LYQEKK 65
L K
Sbjct: 1138 LASAHK 1143
>At1g42470.1 68414.m04897 patched family protein similar to
SP|O15118 Niemann-Pick C1 protein precursor from Homo
sapiens (GB:AAB63982) (GI:2276463); contains Pfam
profile PF02460 Patched family
Length = 1272
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 110 VCFLMLLCYVVAKKKTEDHKVKIAVYYESLCPDSKKFITTQLAPVWR 250
V ++LLC + + K E K+ V S + K+F T LAP +R
Sbjct: 356 VSVVLLLCVGLIRFKVETRPDKLWVGSGSRAAEEKQFFDTHLAPFYR 402
>At1g15130.1 68414.m01807 hydroxyproline-rich glycoprotein family
protein
Length = 846
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 370 GASLRPEGPQPPGHGEDGDCNMPHEPDQPRQ 462
G S+ P GP PP H G P+ P +Q
Sbjct: 776 GYSIPPYGPPPPYHTPHGQAPQPYPPQAQQQ 806
>At5g43130.1 68418.m05265 transcription initiation factor IID
(TFIID) component TAF4 family protein weak similarity to
SP|O00268 Transcription initiation factor TFIID 135 kDa
subunit {Homo sapiens}; contains Pfam profile PF05236:
Transcription initiation factor TFIID component TAF4
family
Length = 712
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 494 KMSESDKLKRCASSEQGDNLLASYGDKTD 580
K +E++KLK+ + SE+GD + S DK D
Sbjct: 556 KQAEAEKLKKPSESEEGDGGVDSEKDKED 584
>At4g03420.1 68417.m00469 expressed protein
Length = 310
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 428 VICLMNQTSPDKSLDTCLTQVDKMSESDKLKRCASSE 538
+I L + + +S D+ SESDKL RCAS E
Sbjct: 97 LIRLRDDSEDGESRDSFSDSYSDESESDKLSRCASDE 133
>At1g06490.1 68414.m00688 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1933
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Frame = +2
Query: 128 LCYVVAKKKTEDHKVKIA-VY------YESLCPDSKKFITTQLAPVWRDFRGLVKVKMVP 286
LCY+ E H + VY YE+ PD + F+ + P+++ R +V+
Sbjct: 363 LCYIFHNMANEVHGILFGNVYPVTGDTYEAGAPDEEAFLRNVITPIYQVLR--KEVRRNK 420
Query: 287 YGKSTHDK 310
GK++H K
Sbjct: 421 NGKASHSK 428
>At3g59140.1 68416.m06593 ABC transporter family protein putative
multi resistance protein mrp - Arabidopsis thaliana,
EMBL:ATMRPPROT
Length = 1453
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 404 QDTEKMEIVICLMNQTSPDKSLDTCLTQVDKMSESDKLKRCASSEQGDNLLASY 565
++T E V+ + N T P K ++ ++ K+ + +L + E+GD L Y
Sbjct: 827 RETAGSERVVAVENPTKPVKEINRVISSQSKVLKPSRLIKQEEREKGDTGLRPY 880
>At3g18290.1 68416.m02326 zinc finger protein-related weak alignment
to Pfam profiles: PF00097 Zinc finger, C3HC4 type (RING
finger) (2 copies)
Length = 1254
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -1
Query: 215 SCCQDKGIRNRPLF*PYGLRFSSSPRHSRAASESKPAGESSSCC 84
SCCQ + R ++P + A+ KP+G SCC
Sbjct: 563 SCCQHQDKRPAKRTAVLSCEKKTTPHSTEVANGCKPSGNGRSCC 606
>At2g37730.1 68415.m04627 fringe-related protein similarity to
predicted proteins + similar to hypothetical protein
GB:AAC23643 [Arabidopsis thaliana] + weak similarity to
Fringe [Schistocerca gregaria](GI:6573138);Fringe
encodes an extracellular protein that regulates Notch
signalling.
Length = 532
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -1
Query: 584 QHPFYHRTTRADCLLVHWMRIFSVYPTPTSCPLELSTCPKTCRGWSGS 441
QH F H TR + V W +YPT + EL T T + W S
Sbjct: 352 QHSFCHDQTRNWYVSVSWGYTIQIYPTLVTAK-ELETPFLTFKSWRTS 398
>At5g39440.1 68418.m04777 Snf1-related protein kinase, putative
similar to SNF1-related protein kinase KIN10 (EC
2.7.1.-) (AKIN10) [Arabidopsis thaliana]
SWISS-PROT:Q38997
Length = 494
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/53 (20%), Positives = 26/53 (49%)
Frame = -2
Query: 208 VRTKGFVIDRYFDLMVFGFLLRHDIAEQHQKANQPESLHLVVLYQEKKRLYDF 50
++ G I ++ + FL+ I Q++ P +++V+ Y + L+D+
Sbjct: 55 IKNMGIEIKVQREIKILRFLMHPHIIRQYEVIETPNDIYVVMEYVKSGELFDY 107
>At5g38260.1 68418.m04612 serine/threonine protein kinase, putative
similar to receptor serine/threonine kinase PR55K
gi|1235680|gb|AAC49208; contains protein kinase domain,
Pfam:PF00069; contains serine/threonine protein kinase
domain, INTERPRO:IPR002290
Length = 638
Score = 27.9 bits (59), Expect = 6.5
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Frame = +2
Query: 212 KKFITTQLAPVWRDFRGLVKVKMVPYGK-----STHDKVDGKWSFICHHGADECYGNKVQ 376
K+ + L P + +GLV++K Y + GK F +G + C G KV
Sbjct: 288 KRRTSHHLRPRDNNLKGLVQLKQYSYAEVRKITKLFSHTLGKGGFGTVYGGNLCDGRKVA 347
Query: 377 ACVLKDRNLQDTEKMEIVICLMNQTS 454
+LKD + E + M+QTS
Sbjct: 348 VKILKDFK-SNGEDFINEVASMSQTS 372
>At5g51750.1 68418.m06417 subtilase family protein similar to
subtilisin-like protease GI:3687307 from [Lycopersicon
esculentum]
Length = 780
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 149 KKTEDHKVKIAVYYESLCPDSKKFITTQLAPVWRDFRG 262
++ DH V + V + P+S+ F T ++PV +RG
Sbjct: 141 ERVTDHDVVVGVLDTGIWPESESFNDTGMSPVPATWRG 178
>At4g00416.1 68417.m00056 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429: Methyl-CpG
binding domain
Length = 163
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 170 VKIAVYYESLCPDSKKF 220
VK+ VYYESL P K+F
Sbjct: 90 VKVDVYYESLAPRRKRF 106
>At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1007
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +2
Query: 386 LKDRNLQDTEKMEI---VICLMNQTSPDKSLDTCLTQVDKMSESDKLK 520
L + N+QD+E ++ CL N D S +CLT++ +S + L+
Sbjct: 603 LVEVNMQDSELQKLWEGTQCLANLKKIDLSRSSCLTELPDLSNATNLE 650
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,837,652
Number of Sequences: 28952
Number of extensions: 346632
Number of successful extensions: 1111
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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