Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31510
         (746 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q73MR3 Cluster: Membrane protein, putative; n=1; Trepon...    35   1.8  
UniRef50_A5KBU8 Cluster: Putative uncharacterized protein; n=2; ...    34   4.3  

>UniRef50_Q73MR3 Cluster: Membrane protein, putative; n=1; Treponema
           denticola|Rep: Membrane protein, putative - Treponema
           denticola
          Length = 282

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 22/71 (30%), Positives = 38/71 (53%)
 Frame = -1

Query: 242 FCYFILSLFIQVSFL*LPLKICFISKVAKLKFTKFLSAGKCHTNYLYLRLP*LACINFFF 63
           F  F +S  I +S   +P+   +IS+     F   + AG  +  YL+L    LAC+N+FF
Sbjct: 170 FFIFFISFLICLS---MPINNFYISRY----FLSDIKAGHSYI-YLFLIAALLACVNYFF 221

Query: 62  IYLLSFVRVFL 30
           +Y+   ++ +L
Sbjct: 222 VYITKNIKEYL 232


>UniRef50_A5KBU8 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 1506

 Score = 33.9 bits (74), Expect = 4.3
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -1

Query: 461 IHFCSVMLTFGSNWRNHLYCLNLSIYIIALDIF*LLYEILSKV 333
           I+F SV+  F S W NH +  +LS  ++ L  F  +Y IL K+
Sbjct: 169 IYFESVLYLFVSIWNNHYFDFSLSNTMVILTFFYKIYIILKKL 211


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 649,470,560
Number of Sequences: 1657284
Number of extensions: 12208910
Number of successful extensions: 24397
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24386
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61323318355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)