Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31510
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34335| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.33 
SB_45393| Best HMM Match : Pkinase_Tyr (HMM E-Value=0.088)             28   9.2  

>SB_34335| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 44

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 124 SVTQIIYILDCHNLPASIFFLYIYCR 47
           ++ Q+IY  +CHNLP  + FL   CR
Sbjct: 15  TLQQLIYTRNCHNLPVEVLFLENSCR 40


>SB_45393| Best HMM Match : Pkinase_Tyr (HMM E-Value=0.088)
          Length = 488

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 13  IYEYSFKNTLTNDNKYIKKKLMQASYGNLRYK 108
           +Y ++ +N     N+ IKKK +  SYG L Y+
Sbjct: 339 LYGFANRNGRFYKNRCIKKKDLPVSYGGLHYR 370


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,128,297
Number of Sequences: 59808
Number of extensions: 381545
Number of successful extensions: 592
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)