Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31510
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to ...    31   0.81 
At5g51230.1 68418.m06352 embryonic flower 2 (EMF2) identical to ...    31   0.81 
At5g22670.1 68418.m02649 F-box family protein contains F-box dom...    29   4.3  
At4g15236.1 68417.m02335 ABC transporter family protein similar ...    29   4.3  
At5g15680.1 68418.m01834 expressed protein                             27   10.0 

>At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to
           embryonic flower 2 [Arabidopsis thaliana] GI:14276050;
           supporting cDNA gi|14276049|dbj|AB053171.1|
          Length = 626

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 82  ASYGNLRYK*FV*HFPALKNLVNFSFATFEIKHIFNGSYKNETCINKL 225
           AS+  LRY     H P+  +L+NF F   E     N S K ET I+K+
Sbjct: 334 ASFKGLRY-----HLPSTHDLLNFEFWVTEEFQAVNVSLKTETMISKV 376


>At5g51230.1 68418.m06352 embryonic flower 2 (EMF2) identical to
           embryonic flower 2 [Arabidopsis thaliana] GI:14276050;
           supporting cDNA gi|14276049|dbj|AB053171.1|
          Length = 631

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 82  ASYGNLRYK*FV*HFPALKNLVNFSFATFEIKHIFNGSYKNETCINKL 225
           AS+  LRY     H P+  +L+NF F   E     N S K ET I+K+
Sbjct: 334 ASFKGLRY-----HLPSTHDLLNFEFWVTEEFQAVNVSLKTETMISKV 376


>At5g22670.1 68418.m02649 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 443

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +1

Query: 67  KKLMQASYGNLRYK*FV*HFPALKNLVNFSFATFEIKHIFNG--SYKNETCINKLKIK*Q 240
           K  ++ S  + R+K F    P L+  V+     +E   + +G      ETCI+KLK+  +
Sbjct: 31  KVAVRTSVLSKRWKRFSLSVPLLEFNVSEFHGYYEFARVVHGFLDTSRETCIHKLKLAFE 90

Query: 241 KHSHN 255
           K  H+
Sbjct: 91  KKQHD 95


>At4g15236.1 68417.m02335 ABC transporter family protein similar to
            pleiotropic drug resistance like protein [Nicotiana
            tabacum] GI:20522008, ABC1 protein [Nicotiana
            plumbaginifolia] GI:14331118; contains Pfam profile
            PF00005: ABC transporter
          Length = 1388

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +1

Query: 562  YVWSV**KVFNLFYFAIVASLALFNVFGMTM 654
            Y WSV  KVF  FY +I  SL +FN FGM +
Sbjct: 1240 YHWSVY-KVFWSFY-SIFCSLLIFNYFGMLL 1268


>At5g15680.1 68418.m01834 expressed protein 
          Length = 2151

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 723  IKGYHLQPCHQSEKGIK*EDPKSHSHSKYIKEGQRSDNG 607
            I    ++P  +   G    DP++ S+SKY  EG R   G
Sbjct: 1057 INSLFIEPAPRVPFGYSPADPRTPSYSKYTGEGGRGTTG 1095


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,235,621
Number of Sequences: 28952
Number of extensions: 273055
Number of successful extensions: 496
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)