Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31509
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    40   5e-04
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    33   0.040
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    26   6.0  
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    26   6.0  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   7.9  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   7.9  

>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 20/65 (30%), Positives = 28/65 (43%)
 Frame = +1

Query: 364 QCHNCQSYGHSSRNCHARPRCVKCLGDHATALCARDLKTATEPPSCVLCQTQGHPANYRG 543
           +C+NC   GH +R C     C  C   + T   A +     +  +C  C T GH    R 
Sbjct: 18  RCYNCGENGHQARECTKGSICYNC---NQTGHKASECTEPQQEKTCYACGTAGHLV--RD 72

Query: 544 CPRAP 558
           CP +P
Sbjct: 73  CPSSP 77



 Score = 35.5 bits (78), Expect = 0.007
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +1

Query: 367 CHNCQSYGHSSRNCHARPRCVKC--LGDHATALCARDLKTATEPPSCVLCQTQGHPA 531
           C+ C SYGH +R+C    +C  C  +G H +  C    + A++   C  C   GH A
Sbjct: 118 CYACGSYGHQARDCTMGVKCYSCGKIG-HRSFEC----QQASDGQLCYKCNQPGHIA 169



 Score = 28.7 bits (61), Expect = 0.85
 Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
 Frame = +1

Query: 361 SQCHNCQSYGHSSRNCHARPRCVKCLGDHATALCARDLKTATEP---PSCVLCQTQGHPA 531
           S C+NC   GH +  C    +   C          RD  ++  P     C  C   GH A
Sbjct: 36  SICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIA 95


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 33.1 bits (72), Expect = 0.040
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
 Frame = +1

Query: 367 CHNCQSYGHSSRNCHARPRCVKC--LGDHATALCARDLKTATEPPSCVLCQTQGHPANYR 540
           CHNC+  GH S++C     C  C  + DH +  C    K       C+ C   GH A   
Sbjct: 89  CHNCKGNGHISKDC-PHVLCTTCGAIDDHISVRCPWTKK-------CMNCGLLGHIAARC 140

Query: 541 GCP--RAPKINR 570
             P  R P++ R
Sbjct: 141 SEPRKRGPRVCR 152


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 226 RGREPYNMVLVTLQPTPEGKKIFNTQTVCRLSGIAVEA 339
           R   PY  ++   +P P+   +   +T+CR   IAV++
Sbjct: 540 RPLRPYAQIIY-FRPPPQASLVGRLRTICRNENIAVDS 576


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 367 CHNCQSYGHSSRNCHARPR 423
           C NC +  H  ++C  RPR
Sbjct: 113 CENCGAMSHKVKDCMERPR 131


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +1

Query: 343 HKKGTPSQCHNCQSY-GHSSRNCHARPRCVKCLGDHATALCAR 468
           H +G   +   C+S  GH  R      RC  C  D  +ALC +
Sbjct: 81  HSEGDEYRHGTCESKCGHIFRKGEVFYRCKTCSVDSNSALCVK 123


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
            complex subunit Taf111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 322  GIAVEAPHKKGTPSQCHNCQSYGHSSRN 405
            GI +    +K T  +C NC   GH   N
Sbjct: 932  GINLNGEGRKPTTRKCSNCGQVGHMKTN 959


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,627,652
Number of Sequences: 5004
Number of extensions: 51973
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)