Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31509
(702 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 40 0.002
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 33 0.18
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 31 0.74
At2g18080.1 68415.m02102 serine carboxypeptidase S28 family prot... 30 1.7
At4g36195.1 68417.m05150 serine carboxypeptidase S28 family prot... 29 2.3
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 29 3.0
At5g41750.2 68418.m05081 disease resistance protein (TIR-NBS-LRR... 29 3.9
At5g41750.1 68418.m05080 disease resistance protein (TIR-NBS-LRR... 29 3.9
At1g49730.3 68414.m05576 protein kinase family protein contains ... 29 3.9
At1g49730.2 68414.m05577 protein kinase family protein contains ... 29 3.9
At1g49730.1 68414.m05575 protein kinase family protein contains ... 29 3.9
At1g10760.1 68414.m01231 starch excess protein (SEX1) identical ... 29 3.9
At3g26370.1 68416.m03289 expressed protein contains Pfam PF03138... 28 5.2
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 28 5.2
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 28 5.2
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 28 5.2
At1g63880.1 68414.m07234 disease resistance protein (TIR-NBS-LRR... 28 5.2
At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B li... 28 6.9
At5g56840.1 68418.m07092 DNA-binding family protein contains Pfa... 28 6.9
At5g41550.1 68418.m05049 disease resistance protein (TIR-NBS-LRR... 28 6.9
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 28 6.9
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 28 6.9
At4g37190.1 68417.m05265 expressed protein 28 6.9
At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein... 28 6.9
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 28 6.9
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 28 6.9
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 28 6.9
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 27 9.1
At5g46670.1 68418.m05751 CHP-rich zinc finger protein, putative ... 27 9.1
At3g59940.1 68416.m06689 kelch repeat-containing F-box family pr... 27 9.1
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 27 9.1
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 27 9.1
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 5/101 (4%)
Frame = +1
Query: 304 TVCRLSGIAVEAPHKKGTPSQCHNCQSYGHSSRNCHARPRCVKC-LGDHATALCARDLKT 480
+VC G+ + S+C NC+ GH + NC C C H C+
Sbjct: 74 SVCNNCGLPGHIAAECTAESRCWNCREPGHVASNCSNEGICHSCGKSGHRARDCSNSDSR 133
Query: 481 ATEPPSCVLCQTQGHPA----NYRGCPRAPKINRHVARQNR 591
A + C C QGH A N + C + + H+AR R
Sbjct: 134 AGDLRLCNNCFKQGHLAADCTNDKACKNC-RTSGHIARDCR 173
Score = 31.5 bits (68), Expect = 0.56
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 367 CHNCQSYGHSSRNCHARPRCVKC-LGDHATALCARDLKTATEPPSCVLCQTQGHPAN 534
C+NC+ GH +R+C C C L H A C T C C+ GH A+
Sbjct: 57 CNNCKRPGHFARDCSNVSVCNNCGLPGHIAAEC-------TAESRCWNCREPGHVAS 106
Score = 31.1 bits (67), Expect = 0.74
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 367 CHNCQSYGHSSRNCHARPRCVKC-LGDHATALCAR 468
C NC++ GH +R+C P C C + H C +
Sbjct: 159 CKNCRTSGHIARDCRNDPVCNICSISGHVARHCPK 193
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 33.1 bits (72), Expect = 0.18
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Frame = +1
Query: 367 CHNCQSYGHSSRNC-------HARPRCVKCLGD--HATALCARDLKT-ATEPPSCVLCQT 516
C C+ GHS +NC + C C GD H+ + C ++ T+ SC +C+
Sbjct: 101 CLQCRRRGHSLKNCPEKNNESSEKKLCYNC-GDTGHSLSHCPYPMEDGGTKFASCFICKG 159
Query: 517 QGHPANYRGCP 549
QGH + + CP
Sbjct: 160 QGHIS--KNCP 168
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 31.1 bits (67), Expect = 0.74
Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 13/93 (13%)
Frame = +1
Query: 349 KGTPSQCHNCQSYGHSSRNC-------HARPRCVKCLG-DHATALCARDLKTATEPPS-- 498
KGT C NC GH C + RC C G H C + T+ S
Sbjct: 260 KGTKFYCKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVTKGISTR 319
Query: 499 ---CVLCQTQGHPANYRGCPRAPKINRHVARQN 588
C +C +GH N R C + +N + +N
Sbjct: 320 YHKCGICGERGH--NSRTCRKPTGVNPSCSGEN 350
>At2g18080.1 68415.m02102 serine carboxypeptidase S28 family protein
similar to SP|Q9NQE7 Thymus-specific serine protease
precursor (EC 3.4.-.-) {Homo sapiens}; contains Pfam
profile PF05577: Serine carboxypeptidase S28
Length = 365
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 487 EPPSCVL-CQTQGHPANYRGCPRAPKI 564
E PS ++ C+ GH ++ RGCP++P +
Sbjct: 299 EMPSYIIKCRNCGHGSDIRGCPQSPMV 325
>At4g36195.1 68417.m05150 serine carboxypeptidase S28 family protein
contains Pfam PF05577: Serine carboxypeptidase S28
Length = 488
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 490 PPSCVLCQTQGHPANYRGCPRAPKI 564
P V C GH ++ RGCP++P +
Sbjct: 424 PSYIVTCHNCGHGSDLRGCPQSPMV 448
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Frame = +1
Query: 367 CHNCQSYGHSSRNC----HARPRCVKCLG-DHATALCARDLKTATEPPSCVLCQTQGHPA 531
C++C GH+S NC R C C +H C++ C +C+ GH A
Sbjct: 168 CYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKG-------HDCYICKKTGHRA 220
Query: 532 NYRGCP 549
+ CP
Sbjct: 221 --KDCP 224
>At5g41750.2 68418.m05081 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1068
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 38 TIGPSLLTSVRNV*VSILIRSRRSANSA 121
TIGP L+ +R VSI++ S++ A+S+
Sbjct: 54 TIGPELIQGIREARVSIVVLSKKYASSS 81
>At5g41750.1 68418.m05080 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1068
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 38 TIGPSLLTSVRNV*VSILIRSRRSANSA 121
TIGP L+ +R VSI++ S++ A+S+
Sbjct: 54 TIGPELIQGIREARVSIVVLSKKYASSS 81
>At1g49730.3 68414.m05576 protein kinase family protein contains
Pfam PF00069: Protein kinase domain; similar to AtPK2324
(GI:1785621) [Arabidopsis thaliana]; similar to
receptor-like protein kinase (GI:1644291) [Catharanthus
roseus]; similar to somatic embryogenesis receptor-like
kinase (GI:2224911) [Daucus carota]
Length = 394
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +1
Query: 355 TPSQCHNCQSYGHSSRNCHA--RP--RCVKCLGDHATAL 459
T +Q H +GH SRNC P +C KCL T L
Sbjct: 67 TVTQMHQSPGFGHVSRNCRLPFSPGHQCRKCLNSGITYL 105
>At1g49730.2 68414.m05577 protein kinase family protein contains
Pfam PF00069: Protein kinase domain; similar to AtPK2324
(GI:1785621) [Arabidopsis thaliana]; similar to
receptor-like protein kinase (GI:1644291) [Catharanthus
roseus]; similar to somatic embryogenesis receptor-like
kinase (GI:2224911) [Daucus carota]
Length = 450
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +1
Query: 355 TPSQCHNCQSYGHSSRNCHA--RP--RCVKCLGDHATAL 459
T +Q H +GH SRNC P +C KCL T L
Sbjct: 123 TVTQMHQSPGFGHVSRNCRLPFSPGHQCRKCLNSGITYL 161
>At1g49730.1 68414.m05575 protein kinase family protein contains
Pfam PF00069: Protein kinase domain; similar to AtPK2324
(GI:1785621) [Arabidopsis thaliana]; similar to
receptor-like protein kinase (GI:1644291) [Catharanthus
roseus]; similar to somatic embryogenesis receptor-like
kinase (GI:2224911) [Daucus carota]
Length = 663
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +1
Query: 355 TPSQCHNCQSYGHSSRNCHA--RP--RCVKCLGDHATAL 459
T +Q H +GH SRNC P +C KCL T L
Sbjct: 123 TVTQMHQSPGFGHVSRNCRLPFSPGHQCRKCLNSGITYL 161
>At1g10760.1 68414.m01231 starch excess protein (SEX1) identical to
SEX1 [Arabidopsis thaliana] GI:12044358; supporting cDNA
gi|12044357|gb|AF312027.1|AF312027
Length = 1399
Score = 28.7 bits (61), Expect = 3.9
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Frame = +1
Query: 10 IKIKVQTPDDHRALSSYLRKERISFHTYTLQEERE----LRVVIR-GIPKELDVELGKAD 174
+K V P+D + +YLR ER Y ++E+E R +R + + VE +A
Sbjct: 205 VKQNVSVPEDLVQIQAYLRWERKGKQMYNPEKEKEEYEAARTELREEMMRGASVEDLRAK 264
Query: 175 LLEQGFPVNSVHRMHT-GRGREPYNMVLVTLQPTPEGKKIFNTQTVCR 315
LL++ S T GRE V PE KK +NT + R
Sbjct: 265 LLKKDNSNESPKSNGTSSSGREEKKKV----SKQPERKKNYNTDKIQR 308
>At3g26370.1 68416.m03289 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown;
Length = 557
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 295 NTQTVCRLSGIAVEAPHKKGTPSQCHNCQSYGHSSRNCHAR 417
N +C+ GI + PH K +PS N S S + C R
Sbjct: 104 NAPYLCKKDGIVLNCPHVKESPSPWENPLSATTSWKPCAER 144
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 9/68 (13%)
Frame = +1
Query: 358 PSQCHNCQSYGHSSRNCH-------ARPRCVKCLGD-HATALCARDLKTATEPPS-CVLC 510
P C+ C GH +R+CH A C C + H + C P C C
Sbjct: 33 PRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWC 92
Query: 511 QTQGHPAN 534
Q H N
Sbjct: 93 GNQDHRFN 100
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 28.3 bits (60), Expect = 5.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 358 PSQCHNCQSYGHSSRNC 408
P +C NC +Y HS R C
Sbjct: 195 PPRCFNCGAYSHSIREC 211
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 28.3 bits (60), Expect = 5.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 358 PSQCHNCQSYGHSSRNC 408
P +C NC +Y HS R C
Sbjct: 195 PPRCFNCGAYSHSIREC 211
>At1g63880.1 68414.m07234 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1017
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = +2
Query: 38 TIGPSLLTSVRNV*VSILIRSRRSANSA 121
TIGPSL+ +++ +SI+I S++ A+S+
Sbjct: 55 TIGPSLVEAIKESRISIVILSKKYASSS 82
>At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B
light-insensitive protein, putative similar to ULI3
(UV-B light insensitive) [Arabidopsis thaliana]
GI:17225050; contains Pfam profile PF03107: DC1 domain
Length = 656
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/62 (25%), Positives = 23/62 (37%)
Frame = +1
Query: 352 GTPSQCHNCQSYGHSSRNCHARPRCVKCLGDHATALCARDLKTATEPPSCVLCQTQGHPA 531
G+ C C+ Y H ++ C DH L + T + +C LC Q H
Sbjct: 148 GSSYSCLGCELYFHVGCIHLSKEVNHPCHSDHPLMLVESESLTDNDKKTCFLCGQQPHGI 207
Query: 532 NY 537
Y
Sbjct: 208 LY 209
>At5g56840.1 68418.m07092 DNA-binding family protein contains Pfam
domains, PF00249: Myb-like DNA-binding domain and
PF00098: Zinc knuckle
Length = 233
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +1
Query: 364 QCHNCQSYGHSSRNCHA-RPRCVKCLGDH 447
+C +C + GH+SR C + + R V+ G H
Sbjct: 4 RCSHCGNVGHNSRTCSSYQTRVVRLFGVH 32
>At5g41550.1 68418.m05049 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1085
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +2
Query: 38 TIGPSLLTSVRNV*VSILIRSRRSANSA 121
TIGP L+ ++R VSI++ S++ A+S+
Sbjct: 54 TIGPELVNAIRESRVSIVLLSKKYASSS 81
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 358 PSQCHNCQSYGHSSRNC 408
P +C NC Y HS R C
Sbjct: 240 PPRCFNCGGYSHSLREC 256
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 27.9 bits (59), Expect = 6.9
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Frame = +1
Query: 334 EAPHKKGTPSQCHNCQSYGHSS--RNCHARPRCVKC-----LGDHATALCARDLKTATEP 492
E H+ +C+ C S GH H + V C LG H C R + P
Sbjct: 44 EYSHEDLKNIKCYVCNSLGHLCCIEPGHTQSWTVSCYRCGQLG-HTGLACGRHYDDSVSP 102
Query: 493 PSCVLCQTQGH 525
SC +C +GH
Sbjct: 103 -SCFICGREGH 112
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 136 IPKELDVELGKADLLEQGFPVNSVHRMHTGRGREPYNMVLVTLQPTP--EGKKIFNT 300
IP + + + VN++ ++ TGRGR+ +L + P P GK++ NT
Sbjct: 322 IPFRMQPTSSDSSEVSNSMDVNTLVQLLTGRGRQNIVAILDSAMPAPTLAGKQLENT 378
>At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 735
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +1
Query: 367 CHNCQSYGHSSRNCHARPRCVKCLGDHATALCARDLKTATEPPSCVLCQTQGH 525
CH+C GH RPRC + L + + A D++ P C QGH
Sbjct: 628 CHHCGVVGH------IRPRCFRLLREKNRLMNAYDVR--FHGPKCYHYGVQGH 672
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +1
Query: 361 SQCHNCQSYGHSSRNCHARPRCVKCLGDHA 450
++C+ C GH RNC P+ ++ G ++
Sbjct: 80 NKCYRCGERGHIERNCKNSPKKLRRSGSYS 109
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +1
Query: 361 SQCHNCQSYGHSSRNCHARPRCVKCLGDHA 450
++C+ C GH RNC P+ ++ G ++
Sbjct: 91 NKCYRCGERGHIERNCKNSPKKLRRSGSYS 120
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +1
Query: 361 SQCHNCQSYGHSSRNCHARPRCVKCLGDHA 450
++C+ C GH RNC P+ ++ G ++
Sbjct: 121 NKCYRCGERGHIERNCKNSPKKLRRSGSYS 150
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 27.5 bits (58), Expect = 9.1
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +1
Query: 367 CHNCQSYGHSSRNCHAR 417
C+ C+ GH +R+CH +
Sbjct: 926 CYRCKKVGHLARDCHGK 942
>At5g46670.1 68418.m05751 CHP-rich zinc finger protein, putative
contains similarity to CHP-rich zinc finger protein
Length = 332
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 266 WRVTRTILYGSLPRPVCIRC 207
W R +L SL RP+C++C
Sbjct: 283 WIDVRALLNSSLSRPICVQC 302
>At3g59940.1 68416.m06689 kelch repeat-containing F-box family
protein contains Pfam profiles PF01344: Kelch motif,
PF00646: F-box domain
Length = 418
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -1
Query: 456 GRGVIAQTLNTSGARVTVTGRVPVRLTVMAL--ARSAFFMGGFDGDTGEPTDGLCVEDF 286
G V TL+T RV + R+P+ +A+ A +GG+D +T +P + V DF
Sbjct: 119 GLSVYNATLDT-WHRVAIPERIPLFCECVAIQDAGKVLLIGGWDPETLQPVRDVFVLDF 176
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 349 KGTPSQCHNCQSYGHSSRNC 408
KGT +C C+ GH +R+C
Sbjct: 111 KGTEDECFKCRRPGHWARDC 130
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 349 KGTPSQCHNCQSYGHSSRNC 408
KGT +C C+ GH +R+C
Sbjct: 111 KGTEDECFKCRRPGHWARDC 130
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,410,965
Number of Sequences: 28952
Number of extensions: 303951
Number of successful extensions: 904
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -