Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31508
         (358 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_43579| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.8  
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)              26   7.8  

>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -3

Query: 215 PSFFVNLTMQSSDSPILRIAPQTTYILDVSAARPVAGSTSAIT 87
           P   V ++ Q   +P + +AP+TT + + + A      T   T
Sbjct: 396 PEISVTISTQPKKAPGITVAPETTVVPETTVASETTAETHQTT 438


>SB_43579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 49  RLIHAKDHASVQLVIADVDPATGR 120
           R+ H  +HA  Q++ A +DP TG+
Sbjct: 44  RVHHGINHAKSQILTAKLDPLTGK 67


>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
          Length = 3094

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -3

Query: 197 LTMQSSDSPILRIAPQTTYILDVSAA 120
           +T +++ +P   +AP+TT +L+ SAA
Sbjct: 7   VTAETTAAPETTVAPETTAVLETSAA 32


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,191,656
Number of Sequences: 59808
Number of extensions: 156745
Number of successful extensions: 452
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)