Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31508
         (358 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal prot...   101   1e-22
Z92967-1|CAB07477.1|  220|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr...    26   6.7  
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr...    26   6.7  

>U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 21 protein.
          Length = 88

 Score =  101 bits (243), Expect = 1e-22
 Identities = 47/78 (60%), Positives = 59/78 (75%), Gaps = 1/78 (1%)
 Frame = +1

Query: 1   GEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGR-AADTSKMYVVCGAIRRMGE 177
           G+ V+LY PRKCS+SNR+I  KDHASVQ+   DVDP TGR     S  Y +CGAIRRMGE
Sbjct: 6   GQTVELYVPRKCSSSNRIIGPKDHASVQIDFVDVDPETGRMIPGKSTRYAICGAIRRMGE 65

Query: 178 SDDCIVRLTKKDGILAKN 231
           SDD I+RL +KDG++ ++
Sbjct: 66  SDDAILRLAQKDGLVPRD 83


>Z92967-1|CAB07477.1|  220|Caenorhabditis elegans Hypothetical
           protein T25E12.4b protein.
          Length = 220

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 100 VDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKDG 216
           V  + G  + +S   +   A R +G + DC+V +TK++G
Sbjct: 123 VADSEGAGSYSSFSSIASTASRMLGRAADCLVLMTKRNG 161


>Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical
           protein C08F8.4 protein.
          Length = 540

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 71  WSLAWMRRLLAEHFLGQYKS 12
           W++AW+RR++ E   G Y++
Sbjct: 359 WTVAWLRRVVYERVEGPYRT 378


>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 183  IRLSHPSDSPTDNIHFRCVSSTTCGGVYVSNH 88
            +RL+  +DS T    FR      CG +Y  NH
Sbjct: 3100 VRLNFTTDSQTTARGFRVNWEAECGAIYRLNH 3131


>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 183  IRLSHPSDSPTDNIHFRCVSSTTCGGVYVSNH 88
            +RL+  +DS T    FR      CG +Y  NH
Sbjct: 3100 VRLNFTTDSQTTARGFRVNWEAECGAIYRLNH 3131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,420,834
Number of Sequences: 27780
Number of extensions: 116889
Number of successful extensions: 325
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)