Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31508
         (358 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27700.1 68418.m03322 40S ribosomal protein S21 (RPS21C) ribo...    70   5e-13
At3g53890.1 68416.m05953 40S ribosomal protein S21 (RPS21B) ribo...    69   9e-13
At3g04890.1 68416.m00531 expressed protein                             28   2.1  
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P...    26   6.4  
At1g68020.2 68414.m07771 glycosyl transferase family 20 protein ...    26   8.5  
At1g68020.1 68414.m07770 glycosyl transferase family 20 protein ...    26   8.5  

>At5g27700.1 68418.m03322 40S ribosomal protein S21 (RPS21C)
           ribosomal protein S21, Zea mays, PIR:T03945
          Length = 85

 Score = 69.7 bits (163), Expect = 5e-13
 Identities = 35/76 (46%), Positives = 48/76 (63%)
 Frame = +1

Query: 1   GEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIRRMGES 180
           G+  +LY PRKCSA+NRLI +KDHASVQL I  +D A G        + +CG +R  G++
Sbjct: 6   GQVTELYIPRKCSATNRLITSKDHASVQLNIGHLD-ANGLYTGQFTTFALCGFVRAQGDA 64

Query: 181 DDCIVRLTKKDGILAK 228
           D  + RL +K  + AK
Sbjct: 65  DSGVDRLWQKKKVEAK 80


>At3g53890.1 68416.m05953 40S ribosomal protein S21 (RPS21B)
           ribosomal protein S21, cytosolic - Oryza sativa,
           PIR:S38357
          Length = 82

 Score = 68.9 bits (161), Expect = 9e-13
 Identities = 34/76 (44%), Positives = 48/76 (63%)
 Frame = +1

Query: 1   GEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIRRMGES 180
           G+  +LY PRKCSA+NR+I +KDHASVQL I  +D A G        + +CG +R  G++
Sbjct: 6   GQVTELYIPRKCSATNRMITSKDHASVQLNIGHLD-ANGLYTGQFTTFALCGFVRAQGDA 64

Query: 181 DDCIVRLTKKDGILAK 228
           D  + RL +K  + AK
Sbjct: 65  DSGVDRLWQKKKVEAK 80


>At3g04890.1 68416.m00531 expressed protein
          Length = 216

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +1

Query: 40  ASNRLIHAKDHASVQLVIADVDPATG-RAADTSKMYVVCGAIRRMGESDDCI 192
           +S  +   KD +  ++   DVD   G   +D    Y V G +     SDDCI
Sbjct: 57  SSTSIATNKDRSKNEVTAGDVDDVMGILRSDYRNFYFVTGVLTSAIYSDDCI 108


>At3g18190.1 68416.m02314 chaperonin, putative similar to
           SWISS-PROT:P50991- T-complex protein 1, delta subunit
           (TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 536

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 152 QTTYILDVSAARPVAGSTSAITSCTE 75
           Q T IL+ +  +P+  STSAIT  TE
Sbjct: 496 QITNILEENVVQPLLVSTSAITLATE 521


>At1g68020.2 68414.m07771 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein similar to
           SP|Q00764 Alpha,alpha-trehalose-phosphate synthase
           [UDP-forming] 56 kDa subunit (EC 2.4.1.15)
           (Trehalose-6-phosphate synthase) {Saccharomyces
           cerevisiae}; contains Pfam profile: PF02358
           trehalose-phosphatase
          Length = 860

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -3

Query: 110 AGSTSAITSCTEAWSLAW 57
           +GS+S+ T C++ W+ +W
Sbjct: 75  SGSSSSSTCCSKGWNFSW 92


>At1g68020.1 68414.m07770 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein similar to
           SP|Q00764 Alpha,alpha-trehalose-phosphate synthase
           [UDP-forming] 56 kDa subunit (EC 2.4.1.15)
           (Trehalose-6-phosphate synthase) {Saccharomyces
           cerevisiae}; contains Pfam profile: PF02358
           trehalose-phosphatase
          Length = 700

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -3

Query: 110 AGSTSAITSCTEAWSLAW 57
           +GS+S+ T C++ W+ +W
Sbjct: 75  SGSSSSSTCCSKGWNFSW 92


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,973,099
Number of Sequences: 28952
Number of extensions: 109011
Number of successful extensions: 245
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)