Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31507
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor |Schizo...    27   0.94 
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   5.0  
SPAPJ691.03 |||DUF543 family protein|Schizosaccharomyces pombe|c...    25   6.7  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   6.7  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    25   6.7  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    25   6.7  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    24   8.8  

>SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 512

 Score = 27.5 bits (58), Expect = 0.94
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
 Frame = +2

Query: 182 GSGSAHPWSSDELDRIAYRRRP-----ALAISAVDDFLRSEATKTFEDETRRIRADTAAL 346
           G+GSAH W    +D   Y   P     A+ IS+ DD+L   A     +E   +  +T  L
Sbjct: 7   GTGSAHEWDRTTID---YDIEPSSDTHAIEISSNDDYLHPLAQFKKSEEFDEVPTNT--L 61

Query: 347 IHRARSVVPRAKSL 388
           IH   S    A ++
Sbjct: 62  IHEVPSFSDSASNI 75


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 261 LPSMTSCAPKQPRLSKMRPVEFAPTLRL*STGLA 362
           LP +T+   K+   +K RPV F P   + + G A
Sbjct: 334 LPKLTAAIDKKSVQAKARPVHFEPPKAVAAEGYA 367


>SPAPJ691.03 |||DUF543 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 86

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 293 LLRSARSHRRQRWPVLGGVGKRFGPAH 213
           ++ S    RR  WPV GG+G   G ++
Sbjct: 34  IVSSVLFFRRAAWPVWGGLGFGLGKSY 60


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 313 DPSNSRRHCGFDPPG 357
           DP ++  H G DPPG
Sbjct: 575 DPDDTNSHIGCDPPG 589


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 341 ALIHRARSVVPRAKSLAPLDTIYSYSYGEP 430
           AL   AR  VP      P   IY+Y+Y +P
Sbjct: 246 ALTSTARESVPAPLPSPPSGPIYTYTYPKP 275


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 191 SAHPWSSDELDRIAYRRRPALAISA---VDDFLRSEATKTFEDETRRIRADTAAL 346
           SAHP SS  +   ++  RPA A+S+     D +RS + ++ E        + +AL
Sbjct: 103 SAHPISSRSVSASSHFGRPASAVSSSLNSSDDVRSMSDESMESYNDEKSVNASAL 157


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -1

Query: 367 HRASPVDQSRSVGANSTGLIFESLGCFGAQEVIDGRDGQCWAASVSDSVQL 215
           H +S   ++RSVGANS   I  SL  F    +  G   Q ++  ++DS+ L
Sbjct: 688 HMSSTGSENRSVGANSD--IKVSLPTFRMVVLSIGLLEQLFSGGLADSIVL 736


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,662,079
Number of Sequences: 5004
Number of extensions: 29679
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)