Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31507
(436 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0448 - 34005581-34005655,34005735-34005830,34006669-340076... 32 0.23
06_03_0147 + 17236158-17236808 29 1.2
03_05_0257 + 22439915-22440275,22440280-22440627,22440962-224410... 29 1.2
12_01_0598 + 4890006-4890290,4890901-4890987 29 1.6
07_03_0082 - 13222635-13223350,13223368-13223928,13224095-132248... 27 5.0
02_04_0499 - 23485707-23485822,23485899-23486112,23486464-234865... 27 5.0
07_03_0662 + 20431448-20432767 27 6.6
09_05_0009 - 20048736-20049423,20049504-20049743,20049832-20050385 27 8.7
07_01_1156 - 10873223-10873417,10873498-10873579,10874235-108743... 27 8.7
05_07_0314 + 29162075-29163436,29163520-29163900,29164911-29165441 27 8.7
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692... 27 8.7
>03_06_0448 - 34005581-34005655,34005735-34005830,34006669-34007616,
34007684-34007851,34007908-34008099,34008164-34008346,
34008414-34008590,34008667-34012074
Length = 1748
Score = 31.9 bits (69), Expect = 0.23
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 159 RVRHESSYRPRCRTVNQFSRHAVGGPVGPTRRVEVTL 49
R R E+S + + +SRHAV PV TR ++V L
Sbjct: 1579 RTRSETSNKLHINSAGYYSRHAVPEPVSVTREIKVPL 1615
>06_03_0147 + 17236158-17236808
Length = 216
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 319 SNSRRHCGFDPPGSLCGAARQVLSTTRHHL 408
S+ +RH G PG L A R L T HHL
Sbjct: 43 SHRQRHGGMPSPGDLAAALRGRLLTEDHHL 72
>03_05_0257 +
22439915-22440275,22440280-22440627,22440962-22441015,
22441390-22441763
Length = 378
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -3
Query: 380 WRAAPQSEPGGSKPQCRREFDGSHLRKSWLLRS 282
WR P P P+ RRE DG R+ W RS
Sbjct: 11 WRPVPHEAPPLPLPRLRRE-DGQEKRRRWPFRS 42
>12_01_0598 + 4890006-4890290,4890901-4890987
Length = 123
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -3
Query: 422 RMNMSRWCRVVLRTWR-AAPQSEPGGSKPQCRREFDGSHLR 303
R+++ VL +WR A + PGGS+P E G+ R
Sbjct: 47 RLDVDERMGTVLASWRKTAGRGRPGGSRPAAEAEIQGADPR 87
>07_03_0082 -
13222635-13223350,13223368-13223928,13224095-13224839,
13226548-13226638,13227330-13227342,13227633-13227689,
13229170-13229260,13229444-13229476,13229588-13230085
Length = 934
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 353 GGSKPQCRREFDGSHLRKSWLLRSARSHRRQR 258
G K RRE + S++ ++W LRS +H+ R
Sbjct: 496 GNQKLGPRREEESSNMSRAWRLRSDMTHKSLR 527
>02_04_0499 -
23485707-23485822,23485899-23486112,23486464-23486511,
23486609-23486695,23486808-23486945,23487159-23487389,
23488524-23489504
Length = 604
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 266 VDDFLRSEATKTFEDETRRIRADTAALIHRARSVVPRAKSLAPLDTI 406
VD + R+ E TR A +HRA + V R +S+ PL+ +
Sbjct: 87 VDPWTRASLVAWMEGITRGHAGLAAGTLHRAVAYVDRYQSVRPLEAV 133
>07_03_0662 + 20431448-20432767
Length = 439
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 69 RRVEVTLVYHG*CSCYRSGFTR 4
RR+ + L +HG C C S F R
Sbjct: 88 RRLPIVLYFHGGCFCTESAFCR 109
>09_05_0009 - 20048736-20049423,20049504-20049743,20049832-20050385
Length = 493
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 295 GCFGAQEVIDGRDGQCWAASVSDS 224
G F A V+DGRD WA + +++
Sbjct: 367 GRFAAANVLDGRDDTYWAPAAAEA 390
>07_01_1156 - 10873223-10873417,10873498-10873579,10874235-10874336,
10874456-10874553,10874692-10874778,10874869-10875317,
10875414-10875744,10875766-10875884,10875935-10876124,
10876319-10876657,10876735-10876875,10876958-10877440,
10877703-10877901,10879447-10879643
Length = 1003
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 288 KQPRLSKMRPVEFAPTLRL*STGLALWC 371
+QPR P AP L +TG ++WC
Sbjct: 927 QQPRYQACNPKYQAPVSALTNTGTSVWC 954
>05_07_0314 + 29162075-29163436,29163520-29163900,29164911-29165441
Length = 757
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 96 AVGGPVGPTRRVEVTLVYHG*CSCYRSGFT 7
A G + +RR TLV G C C R G T
Sbjct: 637 AARGALVASRRATTTLVVSGRCRCRRPGVT 666
>03_02_0260 -
6924532-6924757,6925443-6925546,6925729-6926007,
6926093-6926368,6926460-6926678,6926758-6926926,
6927208-6927382,6927489-6927600,6929566-6929820
Length = 604
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 46 YESDFYTTRRPYRSTYSVTAELIYRPTSRS 135
Y FYT R+P ST + A +Y+ S S
Sbjct: 393 YLESFYTLRKPVASTINTLAGALYKVFSAS 422
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,230,090
Number of Sequences: 37544
Number of extensions: 255891
Number of successful extensions: 940
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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