Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31507
         (436 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20777| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_44872| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)                  28   3.8  
SB_8274| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.8  
SB_14638| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_39043| Best HMM Match : Pkinase (HMM E-Value=2.7e-09)               27   8.8  
SB_25273| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_20777| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -1

Query: 358 SPVDQSRSVGANSTGLIFESLGCFGAQEVIDGRDGQCWAASVSDSVQLI 212
           S  D    +GAN T +   S  C G Q  I+G D    A  V+DS + I
Sbjct: 194 SEEDNGSLLGAN-TEICHSSCHCQGCQSQIEGDDTPVAAREVADSCETI 241


>SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +2

Query: 218 LDRIAYRRRPALAISAVDDFLRSEATKTFEDETRRIRADTAALIHRARS 364
           ++R    RRP+L    V  F  + +    EDE   +RA    L HR RS
Sbjct: 92  MERKKKGRRPSLFRRFVGAFRNNPSNSEAEDEESELRAPPDYLSHRRRS 140


>SB_44872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 908

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +2

Query: 260 SAVDDFLRSEATKTFEDETRRIRADTAALIHRARSVVPRAKSLAPLDTIYSYSYGEP 430
           + +D FL++ A          + ADTAA +  A   V  +K +  L T+ S ++  P
Sbjct: 661 TVLDSFLKASAAGGLGSVKAEVLADTAAALASANVQVVSSKVIGRLHTLISKTFISP 717


>SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)
          Length = 1089

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 252 WPSLPSMTSCAPKQPRLSKMRPVEFAPT 335
           W  L      +PK PR+ ++  V+FAPT
Sbjct: 465 WDQLEENDVASPKSPRVDQVVRVQFAPT 492


>SB_8274| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 252 WPSLPSMTSCAPKQPRLSKMRPVEFAPT 335
           W  L      +PK PR+ ++  V+FAPT
Sbjct: 164 WDQLEENDVASPKSPRVDQVVRVQFAPT 191


>SB_14638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 258

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 28  RALTMVYESDFYTTRRPYRSTYSVTAEL--IYRPTSRSVTRLVTY 156
           + L M+Y+ DF  TR+  + T S + EL  +  P S    R++ Y
Sbjct: 38  KRLPMLYDEDFMATRKNQQQTQSESLELEELAMPVSPYNVRVLYY 82


>SB_39043| Best HMM Match : Pkinase (HMM E-Value=2.7e-09)
          Length = 239

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -2

Query: 192 DPDPHHVMRHIRVRHESSYRPRCRTVNQFSRHAVGGPVG 76
           D  P +++  +    +SS RPRC      +  ++ GP G
Sbjct: 92  DIKPENILLEVEPADKSSKRPRCSERKSAAFSSIAGPSG 130


>SB_25273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 845

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +1

Query: 7   SETRTITRALTMVYESDFYTTRRPYRSTYSVTAELIYRPTSRSVTRLVT 153
           S T  +  A T+VY     T    YRS YS ++   YR  + ++T  +T
Sbjct: 773 STTSAVAEAPTIVYIQFEVTFALEYRSEYSNSSSSEYRELALNLTLALT 821


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,478,122
Number of Sequences: 59808
Number of extensions: 259703
Number of successful extensions: 739
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)