Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31507
         (436 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23330.1 68414.m02917 expressed protein                             30   0.77 
At1g31930.2 68414.m03924 extra-large guanine nucleotide binding ...    28   3.1  
At1g31930.1 68414.m03923 extra-large guanine nucleotide binding ...    28   3.1  
At2g22830.1 68415.m02711 squalene monooxygenase, putative / squa...    27   5.5  
At4g39850.1 68417.m05646 peroxisomal ABC transporter (PXA1) iden...    27   7.2  
At1g40129.1 68414.m04766 hypothetical protein                          27   7.2  
At5g27630.1 68418.m03310 acyl-CoA binding family protein similar...    26   9.5  
At5g01510.1 68418.m00065 expressed protein contains Pfam domain,...    26   9.5  
At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family ...    26   9.5  

>At1g23330.1 68414.m02917 expressed protein
          Length = 471

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -1

Query: 166 AHQGTSRVELP-TEMSDGKSVQPSRCRWTCRADASCRSHSRIPWLMLVLSFGF 11
           A  GT+R  +   +  DGKS++P      C+          IPWL    +FGF
Sbjct: 206 ALNGTTRTYIDGIQPEDGKSLKPISLLQICKLGVIMYDWIDIPWLKSYYNFGF 258


>At1g31930.2 68414.m03924 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 848

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 182 GSGSAHPWSSDELDRIAYRRRPALAISAVDDFLRSEATKTFEDETRRIRADT 337
           GS S  P S    +    RR P +    VDD  R E  +  E+E   + A+T
Sbjct: 102 GSASVSPVSGHRQNGNQVRR-PVVKFKPVDDHDRIEGREAAEEEDNNVEAET 152


>At1g31930.1 68414.m03923 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 848

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 182 GSGSAHPWSSDELDRIAYRRRPALAISAVDDFLRSEATKTFEDETRRIRADT 337
           GS S  P S    +    RR P +    VDD  R E  +  E+E   + A+T
Sbjct: 102 GSASVSPVSGHRQNGNQVRR-PVVKFKPVDDHDRIEGREAAEEEDNNVEAET 152


>At2g22830.1 68415.m02711 squalene monooxygenase, putative /
           squalene epoxidase, putative similar to SP|O65404 (SE
           1,1), SP|O65402 (SE 1,2), SP|O65403 (SE 2)
          Length = 585

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 46  YESDFYTTRRPYRSTYSVTAELIYR 120
           Y   FYT R+P  ST +  A+ +Y+
Sbjct: 451 YIESFYTLRKPVASTINTLADALYK 475


>At4g39850.1 68417.m05646 peroxisomal ABC transporter (PXA1)
           identical to peroxisomal ABC transporter PXA1
           GI:15320529 from [Arabidopsis thaliana]; contains Pfam
           profile PF00005: ABC transporter;
          Length = 1337

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 58  FYTTRRPYRSTYSVTAELIYRPTSRSVTRLVT 153
           FY  +RPY +  ++  +LIY  TS   + L+T
Sbjct: 519 FYVPQRPYMAVGTLRDQLIYPLTSGQESELLT 550


>At1g40129.1 68414.m04766 hypothetical protein
          Length = 567

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +2

Query: 185 SGSAHPWSSDEL-DRIAYRRRPALAISAVDDFLRSEATKTFEDETRRIRADTAALIHRAR 361
           +G+A+ W   E+ DR+ Y+  P      + +FLR++      + +R++      L  + +
Sbjct: 121 TGNAYKWWLQEVEDRLYYKEPPITLWRDLKEFLRNKYALQVSNRSRKVSITAQGLAAQEK 180

Query: 362 SVV 370
             V
Sbjct: 181 EQV 183


>At5g27630.1 68418.m03310 acyl-CoA binding family protein similar to
           RING finger rngB protein, cytosolic - Dictyostelium
           discoideum, PIR:S68824; contains Pfam profiles PF01344:
           Kelch motif, PF00887: Acyl CoA binding protein (ACBP)
          Length = 648

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 64  CRSHSRIPWLMLVLSFGFHSR 2
           C  HS IPW   +LS G H++
Sbjct: 245 CAGHSLIPWDNQLLSIGGHTK 265


>At5g01510.1 68418.m00065 expressed protein contains Pfam domain,
           PF04884: Protein of unknown function, DUF647
          Length = 509

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 249 HWPSLPSMTSCAPKQPRLSKMR 314
           H P   +MTSC PK+ R+  +R
Sbjct: 12  HIPQTRTMTSCQPKRRRVEHLR 33


>At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family
           protein / snRNP family protein contains similarity to
           U4/U6 small nuclear ribonucleoprotein hPrp3 [Homo
           sapiens] gi|2708307|gb|AAC51926
          Length = 786

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 222 TESLTDAAQHWPSLPSMTSCAPKQPRLSKMRPV 320
           T  +T  A  + S+PS  S AP Q  L+K+  +
Sbjct: 154 TSGVTMGASTYSSIPSEASAAPSQTLLTKVSSI 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,120,680
Number of Sequences: 28952
Number of extensions: 173383
Number of successful extensions: 486
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)