Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31501
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    25   9.5  

>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
 Frame = -2

Query: 641 FFAH---YVKYFFNCCTYILSM*QLK*TCAIFKRDL*TIHKCHFTQNRSLLGKKKMN 480
           F+AH   +V   FN   Y+ S   L     I   DL   H+CH   NR    K  +N
Sbjct: 115 FYAHAILFVMELFNKEQYLQSSKLLIFCLRILPADLPNDHQCHILVNRLESCKNYLN 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,389,586
Number of Sequences: 5004
Number of extensions: 46323
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)