Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31501
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026211-7|AAB71292.1|  306|Caenorhabditis elegans Hypothetical ...    29   2.2  
AL032652-6|CAA21710.2|  752|Caenorhabditis elegans Hypothetical ...    28   5.0  
AL032652-5|CAB63399.1|  579|Caenorhabditis elegans Hypothetical ...    28   5.0  

>AF026211-7|AAB71292.1|  306|Caenorhabditis elegans Hypothetical
           protein T13B5.7 protein.
          Length = 306

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 152 KNLSRIVKFF-HFPIYVLRFCMFYLNVIDNFFSKRL 48
           KN  +++KFF +FP +  +F  F+ N   NFF  ++
Sbjct: 73  KNFQQLLKFFQNFPEFFRQFSNFFQNFCFNFFRTQI 108


>AL032652-6|CAA21710.2|  752|Caenorhabditis elegans Hypothetical
           protein Y63D3A.6b protein.
          Length = 752

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 344 QYDDVGNLMYYQYLSGKAFYLFP 276
           +YD+VGN  YY  ++  A  LFP
Sbjct: 7   EYDEVGNTFYYVLVAFYAIILFP 29


>AL032652-5|CAB63399.1|  579|Caenorhabditis elegans Hypothetical
           protein Y63D3A.6a protein.
          Length = 579

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 344 QYDDVGNLMYYQYLSGKAFYLFP 276
           +YD+VGN  YY  ++  A  LFP
Sbjct: 7   EYDEVGNTFYYVLVAFYAIILFP 29


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,955,820
Number of Sequences: 27780
Number of extensions: 254092
Number of successful extensions: 389
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)