Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31500
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha... 206 3e-54
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc... 29 0.61
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 28 1.1
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch... 27 3.2
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 26 4.3
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe... 26 5.6
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom... 26 5.6
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 7.5
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 25 7.5
>SPAC1142.06 |get3||GET complex ATPase subunit Get3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 206 bits (502), Expect = 3e-54
Identities = 98/188 (52%), Positives = 130/188 (69%)
Frame = +3
Query: 45 FEPLEPSLKNVIDQKSLRWIFXXXXXXXXXXXCSCSLAVQLSKVRESVLIISTDPAHNIS 224
F+PL +L+N+++Q SL+WIF SCSLA+Q+SKVR SVL+ISTDPAHN+S
Sbjct: 3 FDPLPGTLENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNLS 62
Query: 225 DAFDQKFSKVPTKVKGFDNLFAMEIDPNVGLTELPEEYFEGESEAMRLDKGVMQEIVGAF 404
DAF KF K KV GFDNL AMEIDPN+ + E+ E+ + G+MQ++
Sbjct: 63 DAFGTKFGKDARKVPGFDNLSAMEIDPNLSIQEMTEQ--ADQQNPNNPLSGMMQDLAFTI 120
Query: 405 PGIDEAMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRLLSFPQVVERGLGKLMRLKSKVAP 584
PGIDEA+++AE++K +K M F V+FDTAPTGHTLR L+FP V+E+ LGKL L S+ P
Sbjct: 121 PGIDEALAFAEILKQIKSMEFDCVIFDTAPTGHTLRFLNFPTVLEKALGKLGGLSSRFGP 180
Query: 585 FINQIASL 608
INQ+ S+
Sbjct: 181 MINQMGSI 188
>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 275
Score = 29.1 bits (62), Expect = 0.61
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 106 SLEGKAELGKLRAVAVSQFSCRKFANLC*SYQLILPTIS 222
+LE E GKLRA+ VS F L S+ I+P ++
Sbjct: 123 ALEKGVEEGKLRAIGVSNFGPHHIQELLDSHPKIIPCVN 161
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/61 (22%), Positives = 28/61 (45%)
Frame = +3
Query: 351 SEAMRLDKGVMQEIVGAFPGIDEAMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRLLSFPQ 530
++A+ + ++ + +D Y ++ L+ F V+D + GH+ L SFP
Sbjct: 641 TDALYSGSSICYSLIFSHSLLDLTFQYVDIASLLS--QFLLCVYDPSNVGHSFALASFPY 698
Query: 531 V 533
V
Sbjct: 699 V 699
>SPBC32H8.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +1
Query: 214 TISLMHSTRNFLKYQQRLKGLTTYSLWRLIRML 312
T+ L ++ +F++YQ +K T +W+LI++L
Sbjct: 2 TVILQYAD-HFVEYQNDMKRYDTLHVWKLIKLL 33
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.2 bits (55), Expect = 4.3
Identities = 21/69 (30%), Positives = 30/69 (43%)
Frame = +1
Query: 160 FSCRKFANLC*SYQLILPTISLMHSTRNFLKYQQRLKGLTTYSLWRLIRMLD*QSCLKNI 339
F C KF NL LI T S+ + FL Y + + L ++L QSC+ +
Sbjct: 168 FGCIKFGNLNLDKALICSTCSISAALLLFLLYVRLPFWTLKHMFSGLFQVLGVQSCVVIV 227
Query: 340 LKENLRL*D 366
K + L D
Sbjct: 228 TKGLMYLFD 236
>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 443
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 65 VEKCYRSKVVKVDFRWRERRSWENYVQLQSRSSAVE 172
+++ +S +D + RER WEN +Q S+ E
Sbjct: 146 IQQALQSISHSIDLQERERIEWENTIQTSSQQKYEE 181
>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 326
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = -2
Query: 310 TFGSISIANRLSNPLTFVGTLENFWSNASEILWAGSVDMIN 188
T G +S L NP F G E W LW + +N
Sbjct: 226 TQGIMSARGLLENPALFAGYEETPWGCVERFLWYSTSYSLN 266
>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 470 TKVHAFY*FHHLSIAHSLINT 408
T+VHAFY + L + S INT
Sbjct: 265 TRVHAFYSLNDLKLETSTINT 285
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -1
Query: 446 FHHLSIAHSLINTRKSSNNLLHDTLVQS 363
F +L I H L NT + + ++HD + ++
Sbjct: 95 FENLEILHQLSNTPRDKDAVIHDKIEEN 122
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,150
Number of Sequences: 5004
Number of extensions: 47019
Number of successful extensions: 139
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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