Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31500
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z11115-12|CAA77452.1|  342|Caenorhabditis elegans Hypothetical p...   201   3e-52
U41029-2|AAL65785.1|  192|Caenorhabditis elegans Hypothetical pr...    61   8e-10
U64854-4|AAB18314.1|  308|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AC024805-12|AAK39343.1|  557|Caenorhabditis elegans Hypothetical...    29   3.9  
AC006611-3|AAM15554.1|  798|Caenorhabditis elegans Protein kinas...    29   3.9  
AC006611-2|AAK85457.1|  867|Caenorhabditis elegans Protein kinas...    29   3.9  
AL132860-16|CAB60516.1|  497|Caenorhabditis elegans Hypothetical...    28   5.2  
AL132860-15|CAB60499.1|  512|Caenorhabditis elegans Hypothetical...    28   5.2  
AL110485-13|CAB60361.2|  314|Caenorhabditis elegans Hypothetical...    27   9.1  
AJ306734-1|CAC37332.1|  314|Caenorhabditis elegans spermidine sy...    27   9.1  
AC025726-24|AAK73926.2|  447|Caenorhabditis elegans Hypothetical...    27   9.1  

>Z11115-12|CAA77452.1|  342|Caenorhabditis elegans Hypothetical
           protein ZK637.5 protein.
          Length = 342

 Score =  201 bits (491), Expect = 3e-52
 Identities = 103/198 (52%), Positives = 130/198 (65%), Gaps = 10/198 (5%)
 Frame = +3

Query: 48  EPLEPSLKNVIDQKSLRWIFXXXXXXXXXXXCSCSLAVQLSKVRESVLIISTDPAHNISD 227
           + LE S+KN+++QK+L+WIF           CSCSLA QLSKVRE VL+ISTDPAHNISD
Sbjct: 3   DQLEASIKNILEQKTLKWIFVGGKGGVGKTTCSCSLAAQLSKVRERVLLISTDPAHNISD 62

Query: 228 AFDQKFSKVPTKVKGFDNLFAMEID--PNVGLTELP--EEYF------EGESEAMRLDKG 377
           AF QKF+K PT V+GF NLFAMEID  PN    E+   EE        EG S    + K 
Sbjct: 63  AFSQKFTKTPTLVEGFKNLFAMEIDSNPNGEGVEMGNIEEMLQNAAQNEGGSGGFSMGKD 122

Query: 378 VMQEIVGAFPGIDEAMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRLLSFPQVVERGLGKL 557
            +Q   G  PGIDEAMS+ E++KL+  ++F  VVFDTAPTGHTLRLL FP ++E+   K+
Sbjct: 123 FLQSFAGGLPGIDEAMSFGEMIKLIDSLDFDVVVFDTAPTGHTLRLLQFPTLLEKVFTKI 182

Query: 558 MRLKSKVAPFINQIASLF 611
           + L+    P +NQ   +F
Sbjct: 183 LSLQGMFGPMMNQFGGMF 200


>U41029-2|AAL65785.1|  192|Caenorhabditis elegans Hypothetical
           protein F47G3.2 protein.
          Length = 192

 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 25/58 (43%), Positives = 38/58 (65%)
 Frame = +3

Query: 438 VMKLVKGMNFSAVVFDTAPTGHTLRLLSFPQVVERGLGKLMRLKSKVAPFINQIASLF 611
           +++L+  + F  VVFDTA TGHTLRLL FP +V+    K++ L+  + P +N I  +F
Sbjct: 1   MIELIDSLGFDVVVFDTASTGHTLRLLQFPTIVDNFFTKILSLQGMLEPMLNNIGGMF 58


>U64854-4|AAB18314.1|  308|Caenorhabditis elegans Hypothetical
           protein K11C4.1 protein.
          Length = 308

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 97  GGFSLEGKAELGKLRAVAVSQFS-CRKFAN 183
           G F L G+AELG+LR + V  F  CRKF +
Sbjct: 144 GNFCL-GRAELGELRKIFVLDFGLCRKFVD 172


>AC024805-12|AAK39343.1|  557|Caenorhabditis elegans Hypothetical
           protein Y51H7C.12 protein.
          Length = 557

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 244 NFWSNASEILWAGSVDMINTDSR 176
           +FWS   + LW GS D +  +SR
Sbjct: 349 DFWSMHQDTLWTGSFDQLELESR 371


>AC006611-3|AAM15554.1|  798|Caenorhabditis elegans Protein kinase
           protein 32, isoformb protein.
          Length = 798

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 434 SIAHSLINTRKSSNNLLHDTLVQSHSLRFSFK 339
           S +HS +   ++SN  LH T   + SLRF  K
Sbjct: 630 STSHSSVENIRTSNGYLHHTPTSTRSLRFEDK 661


>AC006611-2|AAK85457.1|  867|Caenorhabditis elegans Protein kinase
           protein 32, isoforma protein.
          Length = 867

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 434 SIAHSLINTRKSSNNLLHDTLVQSHSLRFSFK 339
           S +HS +   ++SN  LH T   + SLRF  K
Sbjct: 699 STSHSSVENIRTSNGYLHHTPTSTRSLRFEDK 730


>AL132860-16|CAB60516.1|  497|Caenorhabditis elegans Hypothetical
           protein Y56A3A.17b protein.
          Length = 497

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -2

Query: 565 KRISLPRPRSTTCGNDRSLRVCPVGAVSNTTALKFMPFTSFITSA*LIASSIPGKAPTIS 386
           K   LP+P S+  G   S  +   G+ +++T     PF++  T+A L  SS    + T +
Sbjct: 273 KEADLPKPASSLFGASPSKPLVFGGSSADSTTSAPKPFSALSTAASLFGSS--SASTTTT 330

Query: 385 CMTPLS 368
              PLS
Sbjct: 331 ATQPLS 336


>AL132860-15|CAB60499.1|  512|Caenorhabditis elegans Hypothetical
           protein Y56A3A.17a protein.
          Length = 512

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -2

Query: 565 KRISLPRPRSTTCGNDRSLRVCPVGAVSNTTALKFMPFTSFITSA*LIASSIPGKAPTIS 386
           K   LP+P S+  G   S  +   G+ +++T     PF++  T+A L  SS    + T +
Sbjct: 288 KEADLPKPASSLFGASPSKPLVFGGSSADSTTSAPKPFSALSTAASLFGSS--SASTTTT 345

Query: 385 CMTPLS 368
              PLS
Sbjct: 346 ATQPLS 351


>AL110485-13|CAB60361.2|  314|Caenorhabditis elegans Hypothetical
           protein Y46G5A.19 protein.
          Length = 314

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +3

Query: 348 ESEAMRLDKGVMQEIVGAFPGIDEAMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRLLSFP 527
           + E  ++ K   QE+ GA+PG   ++   +V+   K      +VF++   G+ L L    
Sbjct: 25  DEEPTKVLKSDGQEMGGAWPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIV 84

Query: 528 QVVER 542
           Q  ER
Sbjct: 85  QATER 89


>AJ306734-1|CAC37332.1|  314|Caenorhabditis elegans spermidine
           synthase protein.
          Length = 314

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +3

Query: 348 ESEAMRLDKGVMQEIVGAFPGIDEAMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRLLSFP 527
           + E  ++ K   QE+ GA+PG   ++   +V+   K      +VF++   G+ L L    
Sbjct: 25  DEEPTKVLKSDGQEMGGAWPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIV 84

Query: 528 QVVER 542
           Q  ER
Sbjct: 85  QATER 89


>AC025726-24|AAK73926.2|  447|Caenorhabditis elegans Hypothetical
           protein Y71G12B.25 protein.
          Length = 447

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +2

Query: 533 CRTRSRQADAFEVKGCPLHQSNCVTVLD*QISTRTCSATKWM 658
           C+    +   F++K C +H+++ V + D   +T   S  +W+
Sbjct: 347 CKLNMPKILLFDLKNCQIHENSAVELTDLGKATGLASMVQWL 388


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,888,982
Number of Sequences: 27780
Number of extensions: 260687
Number of successful extensions: 638
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)