Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31499
         (748 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2BGS8 Cluster: Novel protein similar to vertebrate tra...    38   0.26 
UniRef50_Q9HCF6 Cluster: Transient receptor potential cation cha...    37   0.61 
UniRef50_Q4SM12 Cluster: Chromosome 13 SCAF14555, whole genome s...    33   5.6  
UniRef50_Q4SEW5 Cluster: Chromosome undetermined SCAF14611, whol...    33   9.9  
UniRef50_Q2WEA6 Cluster: Transient receptor potential cation cha...    33   9.9  
UniRef50_Q7Z4N2 Cluster: Melastatin 1; n=43; Euteleostomi|Rep: M...    33   9.9  

>UniRef50_A2BGS8 Cluster: Novel protein similar to vertebrate
            transient receptor potential cation channel, subfamily M,
            member 3; n=2; Danio rerio|Rep: Novel protein similar to
            vertebrate transient receptor potential cation channel,
            subfamily M, member 3 - Danio rerio (Zebrafish)
            (Brachydanio rerio)
          Length = 1734

 Score = 37.9 bits (84), Expect = 0.26
 Identities = 22/66 (33%), Positives = 40/66 (60%)
 Frame = -1

Query: 223  YLL*IHNILLVSI*VTMD*ILYFIIDSVSSHWSKFEQYSMIL*FITNYVRPLPVA*NKYL 44
            YLL + NILLV++ + +    +F + S+S+   KF++Y +I+ F    V P P+    ++
Sbjct: 1107 YLL-VANILLVNLLIAVFNNTFFEVKSISNQVWKFQRYQLIMTFHERPVLPPPLIIFSHI 1165

Query: 43   TVLNKH 26
            T++ KH
Sbjct: 1166 TMVLKH 1171


>UniRef50_Q9HCF6 Cluster: Transient receptor potential cation channel
            subfamily M member 3; n=121; Deuterostomia|Rep: Transient
            receptor potential cation channel subfamily M member 3 -
            Homo sapiens (Human)
          Length = 1732

 Score = 36.7 bits (81), Expect = 0.61
 Identities = 21/66 (31%), Positives = 40/66 (60%)
 Frame = -1

Query: 223  YLL*IHNILLVSI*VTMD*ILYFIIDSVSSHWSKFEQYSMIL*FITNYVRPLPVA*NKYL 44
            YLL + NILLV++ + +    +F + S+S+   KF++Y +I+ F    V P P+    ++
Sbjct: 1121 YLL-VANILLVNLLIAVFNNTFFEVKSISNQVWKFQRYQLIMTFHERPVLPPPLIIFSHM 1179

Query: 43   TVLNKH 26
            T++ +H
Sbjct: 1180 TMIFQH 1185


>UniRef50_Q4SM12 Cluster: Chromosome 13 SCAF14555, whole genome
            shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 13
            SCAF14555, whole genome shotgun sequence - Tetraodon
            nigroviridis (Green puffer)
          Length = 1504

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 20/63 (31%), Positives = 37/63 (58%)
 Frame = -1

Query: 223  YLL*IHNILLVSI*VTMD*ILYFIIDSVSSHWSKFEQYSMIL*FITNYVRPLPVA*NKYL 44
            YLL + NILLV++ + +    +F + S+S+   KF++Y +I+ F    + P P+    +L
Sbjct: 1280 YLL-VANILLVNLLIAVFNNTFFEVKSISNQVWKFQRYQLIMTFHDRPILPPPLIILSHL 1338

Query: 43   TVL 35
             +L
Sbjct: 1339 YIL 1341


>UniRef50_Q4SEW5 Cluster: Chromosome undetermined SCAF14611, whole
            genome shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
            Chromosome undetermined SCAF14611, whole genome shotgun
            sequence - Tetraodon nigroviridis (Green puffer)
          Length = 1342

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 19/63 (30%), Positives = 37/63 (58%)
 Frame = -1

Query: 223  YLL*IHNILLVSI*VTMD*ILYFIIDSVSSHWSKFEQYSMIL*FITNYVRPLPVA*NKYL 44
            YLL + NILLV++ + +    +F + S+S+   KF++Y +I+ F    + P P+    ++
Sbjct: 1100 YLL-VANILLVNLLIAVFNNTFFEVKSISNQVWKFQRYQLIMTFHDRPILPPPLIIFSHI 1158

Query: 43   TVL 35
             +L
Sbjct: 1159 FIL 1161


>UniRef50_Q2WEA6 Cluster: Transient receptor potential cation
           channel,subfamily M, member 1 variant
           Trpm1delta189-1078; n=2; Mus musculus|Rep: Transient
           receptor potential cation channel,subfamily M, member 1
           variant Trpm1delta189-1078 - Mus musculus (Mouse)
          Length = 738

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 19/54 (35%), Positives = 33/54 (61%)
 Frame = -1

Query: 223 YLL*IHNILLVSI*VTMD*ILYFIIDSVSSHWSKFEQYSMIL*FITNYVRPLPV 62
           YLL + NILLV++ + +    +F + S+S+   KF++Y +I+ F    V P P+
Sbjct: 220 YLL-VANILLVNLLIAVFNNTFFEVKSISNQVWKFQRYQLIMTFHDRPVLPPPM 272


>UniRef50_Q7Z4N2 Cluster: Melastatin 1; n=43; Euteleostomi|Rep:
            Melastatin 1 - Homo sapiens (Human)
          Length = 1533

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 19/54 (35%), Positives = 33/54 (61%)
 Frame = -1

Query: 223  YLL*IHNILLVSI*VTMD*ILYFIIDSVSSHWSKFEQYSMIL*FITNYVRPLPV 62
            YLL + NILLV++ + +    +F + S+S+   KF++Y +I+ F    V P P+
Sbjct: 989  YLL-VANILLVNLLIAVFNNTFFEVKSISNQVWKFQRYQLIMTFHDRPVLPPPM 1041


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 603,899,395
Number of Sequences: 1657284
Number of extensions: 10695740
Number of successful extensions: 17953
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17953
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61323318355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)