Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31499
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    29   0.93 
SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po...    27   3.8  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.7  

>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +1

Query: 256 TGLKYIQNNPTLLKSVLLIQIDKTRRIFTI*ISFNK*F*LAQVKFSH 396
           T L+Y+Q  P    ++  +++DK+ +   + +SF K F LA + F H
Sbjct: 237 TALRYLQKYPEPRAAIRAMRLDKSLK---VPVSFEKEFALADLAFRH 280


>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 213

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 571 LQDVIKSLLEKVFKGF 524
           L+D IK +LEKVF GF
Sbjct: 69  LEDQIKKVLEKVFSGF 84


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 562 HLAMILATCLIIGIFNMTNKKNLA 633
           H    LATC++IG+F++   +N A
Sbjct: 754 HHFFSLATCVLIGVFDLPELQNEA 777


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,925
Number of Sequences: 5004
Number of extensions: 51518
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)