Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31497
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomy...    27   2.2  
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy...    26   6.6  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    26   6.6  
SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   8.8  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   8.8  

>SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 291 VYVGDAVAHYDSTGHIREDANVLLAEGDNGFIFHFIVRRDDLSD 160
           +Y+  A A  D     R +  V+L EG NG +      R + SD
Sbjct: 180 IYIDSAKAMQDGVEFYRSENGVILTEGVNGLLSSKYFSRVETSD 223


>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 427

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 580 IRRFMKSYGTHYIDSFVTGNFIYQVFKYKRS 672
           ++   + YGT +ID F  G ++  + + KR+
Sbjct: 110 VQNLEEQYGTEHIDFFTDGGYMEALTRIKRN 140


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = +1

Query: 67  CTALCIEDDIGYGLNIGNAIDLFANYGDLSQVTQVVSADYEMEDEPIIPFSEKNIRVFA 243
           C  LCI+    YG    + ++ + +Y  L    Q  +  +      + PF EK + +F+
Sbjct: 748 CVYLCIQKFESYGWGASSEMECYFSYCSLIFYYQATTLQF-YNLPKVRPFFEKGVTLFS 805


>SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 100

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 610 HYIDSFVTGNFIYQVFKYKRSGYNRLRSCIRIRNSRPH 723
           H+I SF+  N  Y  + Y  S +N +R  I+ RN+  H
Sbjct: 14  HFIISFMKMNDSYTPYTYIVSFHNFVRFPIKQRNTSIH 51


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/30 (36%), Positives = 22/30 (73%)
 Frame = -3

Query: 413 LIISS*IQSPRNAFQGLLVPSILKF*KYTL 324
           ++ S  +Q+P+N+FQ L++ + LK+  +TL
Sbjct: 355 VVSSKILQNPQNSFQALII-AALKYDPFTL 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,858,551
Number of Sequences: 5004
Number of extensions: 56107
Number of successful extensions: 178
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)