Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31497
(754 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18257| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.43
SB_6240| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_35625| Best HMM Match : DUF296 (HMM E-Value=0.0053) 29 4.1
SB_31772| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_37499| Best HMM Match : 7tm_1 (HMM E-Value=4e-09) 29 5.4
SB_45814| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_1296| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_24755| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
>SB_18257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 463
Score = 32.3 bits (70), Expect = 0.43
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 589 FMKSYGTHYIDSFVTGNFIYQVFKYKRSGYNRLRSCIRIR 708
F+K+YG+H + S G IY + + RSG +R RI+
Sbjct: 177 FIKTYGSHMVTSVTYGASIYS-YAFSRSGSHRTEDDFRIK 215
>SB_6240| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 596 FINRLISAGSLMSSLSIALCMYALTLIPSRSSSSTVRCFLV 474
FIN L S S+++ SI++ Y ++P + RC ++
Sbjct: 73 FINSLFSLASILTICSISIFQYVSVVLPLEKQLTNFRCLVM 113
>SB_35625| Best HMM Match : DUF296 (HMM E-Value=0.0053)
Length = 885
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 127 DLFANYGDLSQVTQVVSADYEMED--EPIIPFSE 222
DLF++YGD + +T S+ E +D EP+ P SE
Sbjct: 45 DLFSHYGDNNDLTPKESSSDEEDDSEEPLTPQSE 78
>SB_31772| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 574 AEIRRFMKSYGTHYIDSFVTGNFIYQVFKYKRS 672
++ RF+K YGTH + S V G I+ + + RS
Sbjct: 148 SDYTRFVKKYGTHMVTSVVFGASIHS-YSFSRS 179
>SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4634
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Frame = -2
Query: 315 FKVFAEQDVYVGDAVAHYDSTGHIRE------DANVLLAEGDNGFIFHFIVRRDDLSDLR 154
F+V E + G V ++ TG+ + V+ EG+ I +V RDD+ +L
Sbjct: 2647 FEVVREYGSF-GRVVVAWNMTGNYSDGDLKPLSGQVMFQEGETRKIISVLVYRDDIPELD 2705
Query: 153 QIAIVR 136
++A++R
Sbjct: 2706 EVAVIR 2711
>SB_37499| Best HMM Match : 7tm_1 (HMM E-Value=4e-09)
Length = 378
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +1
Query: 634 GNFIYQVFKYKRSGYNR 684
G FIY VFKYK +NR
Sbjct: 138 GTFIYDVFKYKNWAFNR 154
>SB_45814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 102
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 136 RTNQWHSQCSIRSLCRLQCTERYK 65
R N W+ C + S CRL C Y+
Sbjct: 42 RLNCWYCYCRLNSYCRLNCWYCYR 65
>SB_1296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 954
Score = 28.3 bits (60), Expect = 7.1
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +1
Query: 325 NVYFQNFKIEGTSKPWKAFLGDWIHDEIMRTFGIEYDMKSDNCCYVLVKLTKKHRTVELE 504
+V+FQ+ E TS +A L + +I T + + S L+K + K R +EL+
Sbjct: 153 SVFFQSETSE-TSAAAEAALEPF--QDIEETSALGQILPSSVDAVRLMKASTKQRDIELK 209
Query: 505 DLEG-IRVRAYIQRAIDKLDIND 570
D+E I VR YI D L +D
Sbjct: 210 DIERCIEVRRYIVGHEDSLSGHD 232
>SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1732
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +1
Query: 517 IRVRAYIQRAIDKLDINDPAEI--RRFMKSYGTHYIDSFVTGNFIYQVFKYKRSGYNRLR 690
+ + + R ++ +DIN+ EI R + Y+ + + I +FKYK+ + R
Sbjct: 587 VMTKRQLDRLMEYIDINNDGEIEYRDLKPGFDNRYV--LMLEDPILDIFKYKKKERKKNR 644
Query: 691 SCI 699
C+
Sbjct: 645 FCV 647
>SB_24755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 176
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 596 FINRLISAGSLMSSLSIALCMYALTLIPSRSSSSTVRCFL 477
++ +SA +++ SIA C +A L P SSS R +
Sbjct: 59 YLEGRLSAWNIIEEKSIAACRHATHLCPDNSSSPLTRTLI 98
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,261,414
Number of Sequences: 59808
Number of extensions: 415501
Number of successful extensions: 1011
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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