Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31497
         (754 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45940.1 68415.m05712 hypothetical protein contains Pfam prof...    29   3.3  
At4g24290.2 68417.m03488 expressed protein                             29   4.4  
At4g24290.1 68417.m03487 expressed protein                             29   4.4  
At1g29690.1 68414.m03628 expressed protein                             29   4.4  
At5g23630.1 68418.m02771 ATPase E1-E2 type family protein / halo...    28   5.8  

>At2g45940.1 68415.m05712 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 399

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -3

Query: 557 SLSIALCMYALTLIPSRSSSSTVRCFLVSFTST*QQLSDFMSYS 426
           SL   L M  L  +P R   ST+R F  S T+T   L  +++YS
Sbjct: 11  SLVFLLLMCLLLTLPQRCRHSTLRMFSSSSTTTNPYLMYYVTYS 54


>At4g24290.2 68417.m03488 expressed protein
          Length = 606

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 505 DLEGIRVRAYIQRAIDKLDINDPAEIRRFMKSYGTHYIDSFVTG 636
           D   + +R ++++A+      DPA + RF+  YGTH I S   G
Sbjct: 143 DKSQVLLREHVKQAVPSTW--DPAALARFIDIYGTHIIVSVKMG 184


>At4g24290.1 68417.m03487 expressed protein
          Length = 350

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 505 DLEGIRVRAYIQRAIDKLDINDPAEIRRFMKSYGTHYIDSFVTG 636
           D   + +R ++++A+      DPA + RF+  YGTH I S   G
Sbjct: 143 DKSQVLLREHVKQAVPSTW--DPAALARFIDIYGTHIIVSVKMG 184


>At1g29690.1 68414.m03628 expressed protein
          Length = 561

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 568 DPAEIRRFMKSYGTHYIDSFVTG 636
           DPA +  F+++YGTH + S   G
Sbjct: 170 DPASLASFIENYGTHIVTSVTIG 192


>At5g23630.1 68418.m02771 ATPase E1-E2 type family protein /
           haloacid dehalogenase-like hydrolase familiy protein
           similar to SP|O14072 Cation-transporting ATPase 4 (EC
           3.6.3.-) {Schizosaccharomyces pombe}; contains InterPro
           accession IPR001757: ATPase, E1-E2 type; contains Pfam
           profile PF00702: haloacid dehalogenase-like hydrolase
          Length = 1179

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 193 EDEPIIPFSEKNIRVFANVSSRIVMGDSI 279
           +++ IIP+SEK I   A      + GDSI
Sbjct: 738 DEKEIIPYSEKEIETLAETHDLCIGGDSI 766


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,718,119
Number of Sequences: 28952
Number of extensions: 285428
Number of successful extensions: 720
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)