Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31491
(718 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 40 5e-04
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 36 0.006
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 35 0.013
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 35 0.013
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 34 0.023
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 32 0.071
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 31 0.16
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual 31 0.16
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 30 0.29
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 30 0.29
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 29 0.50
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 29 0.50
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ... 29 0.50
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 28 1.2
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 28 1.5
SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po... 28 1.5
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 27 2.0
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 2.0
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 27 2.0
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 27 2.7
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 27 2.7
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c... 26 4.7
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 26 4.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 4.7
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 26 6.2
SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit Snu23|... 26 6.2
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 26 6.2
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 26 6.2
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 26 6.2
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 26 6.2
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 25 8.2
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 25 8.2
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 25 8.2
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa... 25 8.2
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 8.2
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 8.2
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 8.2
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun... 25 8.2
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 39.5 bits (88), Expect = 5e-04
Identities = 40/150 (26%), Positives = 76/150 (50%), Gaps = 1/150 (0%)
Frame = +3
Query: 204 EEAEKKRQA-MLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKKISLSI 380
E+ ++RQA +L+ +++ +K ++K E + +R+K K+QL+ K+
Sbjct: 562 EKVAQQRQAKLLEEIEEENKRKQERELKKIREK------EKKRDK-KKQLKLAKEEERQR 614
Query: 381 RIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQKQQLRH 560
R E + L K QE E K E ++ E+ +K+Q+ + ++ +E+QKQ+ R
Sbjct: 615 REAERLAEQAAQKALEAKRQE--EARKKREEQRLKREQEKKQQELERQKREEKQKQKERE 672
Query: 561 KALKKGLDPEALTGKHPPKIQVASKYERRV 650
K LKK EA K + ++ + E+R+
Sbjct: 673 KKLKK-QQQEADREKMAREQRLREEEEKRI 701
Score = 27.9 bits (59), Expect = 1.5
Identities = 32/168 (19%), Positives = 74/168 (44%)
Frame = +3
Query: 177 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEE 356
+IEE+ +R +E E K+ + +D K + K+ E +L ++ LE
Sbjct: 575 EIEEENKRKQERELKKIREKEKKRDKKK---QLKLAKEEERQRREAERLAEQAAQKALEA 631
Query: 357 EKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKE 536
+++ + + ++ + +K QEL + + ++ + E++ K+Q + K
Sbjct: 632 KRQEEARKKREEQRLKR----EQEKKQQELERQKREEKQKQKEREKKLKKQQQEADREKM 687
Query: 537 RQKQQLRHKALKKGLDPEALTGKHPPKIQVASKYERRVDTRSYDDQKK 680
++Q+LR + K+ L+ K K+ + RR + + ++K
Sbjct: 688 AREQRLREEEEKRILEER----KRREKLDKEEEERRRRELLEKESEEK 731
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 35.9 bits (79), Expect = 0.006
Identities = 40/166 (24%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Frame = +3
Query: 177 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 353
+ EEK +R E + KR+A +A ++A + ++K++ A+ E K K + E
Sbjct: 572 EAEEKAKREAEEKAKREAEEKAKREAEENAKR-EAEEKAKREAEEKAKREAEEKAKREAE 630
Query: 354 EEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKR--QDYDLKE 527
E+ K + K E K +++A+E + + E K + EE+ KR ++ +E
Sbjct: 631 EKAKREAEEKAKREAEE-----KAKREAEEKAKREAE-ENAKREAEEKAKREAEENAKRE 684
Query: 528 LKERQKQQLRHKALKKGLDPEALTGKHPPKIQVA---SKYERRVDT 656
+E+ K++ A +K + P+I+ + + E VDT
Sbjct: 685 AEEKVKRETEENAKRKAEEEGKREADKNPEIKSSAPLASSEANVDT 730
Score = 32.3 bits (70), Expect = 0.071
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 7/137 (5%)
Frame = +3
Query: 186 EKRQRLEEAEK-KRQAMLQAMKDASKTGPNFTIQK-KSENFGLSNAQLERNKTKEQLEEE 359
E++ RLE E KR+A QA ++A + +K K E + + E N K + EE+
Sbjct: 550 EEKARLEAEENAKREAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEEN-AKREAEEK 608
Query: 360 KKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETE---KYDLEERQKR--QDYDLK 524
K + K E + + +KA+ E K E E K + EE+ KR ++ +
Sbjct: 609 AKREAEEKAK-REAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEENAKR 667
Query: 525 ELKERQKQQLRHKALKK 575
E +E+ K++ A ++
Sbjct: 668 EAEEKAKREAEENAKRE 684
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 34.7 bits (76), Expect = 0.013
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Frame = +3
Query: 189 KRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKE-QLEEEKK 365
++++LE K + LQ ++D KT + S + A LE + E ++EE K
Sbjct: 29 QKEKLEGDLKTQIKKLQRLRDQIKTWAS------SNDIKDKKALLENRRLIEAKMEEFKA 82
Query: 366 ISLSIRIKPLTIEGLSV-DKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQ 542
+ ++IK + EGLS+ KL K +E + I + +LE + + + + + LK
Sbjct: 83 VEREMKIKAFSKEGLSIASKLDPKEKEKQDTIQWISNAVEELERQAELIEAEAESLKATF 142
Query: 543 KQ 548
K+
Sbjct: 143 KR 144
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 34.7 bits (76), Expect = 0.013
Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = +3
Query: 318 QLERNKTKEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEER 497
+L+R K ++Q E+EKK+ +I ++ L +KL ++ L E + E L E+
Sbjct: 97 RLKREKERQQREQEKKLREQEKIAAKKMKEL--EKLEKERIRLQEQQRRKEERDQKLREK 154
Query: 498 QKRQDYDLKELKERQKQQLR-HKALKKGLD 584
++ Q +++ +++QQL+ + KG++
Sbjct: 155 EEAQRLRQEQILNKERQQLKLNNFFTKGVE 184
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 33.9 bits (74), Expect = 0.023
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = +3
Query: 183 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 362
EEKR+++EE++K + +LQA + K N + KKS + + KE+ + EK
Sbjct: 138 EEKRRKIEESDKWHRVLLQA--EGKKLKDNEQLLKKSIRRKEKEKKKSSDAWKERKDNEK 195
Query: 363 KISL 374
K L
Sbjct: 196 KAML 199
Score = 25.8 bits (54), Expect = 6.2
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +2
Query: 428 TEGPGTLGVHRQTRDREIRSRREAKE---TGLRLKRAQRKTKAATEAQS-SQEGSRPRSA 595
TEG L + + RS+R+A E L L+R + K KA EA+ +++ S+ +
Sbjct: 4 TEGKNDLRAKLAEKIQTFRSQRKATEKVDRALLLQRRKEKAKARAEAKKLAKKESKAKQE 63
Query: 596 HRQAPAQNSSS 628
+ A +S
Sbjct: 64 SKVAAYDTGNS 74
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 32.3 bits (70), Expect = 0.071
Identities = 29/136 (21%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Frame = +3
Query: 180 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 359
+ E +L+ ++K+ + D+ + +QK +S + E+ + ++EE
Sbjct: 73 LSEAETKLKRLDEKQATPELQVSDSKEMEEQLELQKSQFEKRISILEKEKEDLQRKMEEL 132
Query: 360 KKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKEL-KE 536
S+ + +E LS Q++Q + E K + E DL+E ++ ++ K +E
Sbjct: 133 TVESMEVVRLTRQVETLSTQYSIQRSQWVRE-DEKKKKEIQDLKELYEKSEHGAKNWERE 191
Query: 537 RQKQQLRHKALKKGLD 584
R+ Q + + K LD
Sbjct: 192 RETFQNQVSQMSKQLD 207
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 31.1 bits (67), Expect = 0.16
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 440 GTLGVHRQTRDREIRSRREAKETGLRLKRAQRKTKAATEAQSSQE 574
GTLG +Q +RE +S R+ K L K A+R+ + E + ++
Sbjct: 82 GTLGKFQQESEREQKSARKVKRAELEEKLAKRREQELQELEKQEK 126
>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 31.1 bits (67), Expect = 0.16
Identities = 35/132 (26%), Positives = 67/132 (50%), Gaps = 7/132 (5%)
Frame = +3
Query: 333 KTKEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQD 512
KT E+LE+E + ++S +++ L G D +A +L + + YD E++QK ++
Sbjct: 168 KTAEELEKEDREAMSAKLQELIRRGTPADLA--EANKLMKVMAG-----YDTEQKQKYKE 220
Query: 513 YDLKEL-KERQKQQLRHKALKKGLDPEAL-TGKHPPKIQVASK-YERRVD----TRSYDD 671
+ L +L K ++K L + L + + + L +G ++ + K +R+VD S +D
Sbjct: 221 HVLVDLEKVKRKAALFGEMLNEVSESDKLASGDLYDELAYSLKAAQRKVDKILEEMSPED 280
Query: 672 QKKLFEGDLKKL 707
+ DLK L
Sbjct: 281 DSYVTVSDLKSL 292
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 30.3 bits (65), Expect = 0.29
Identities = 18/52 (34%), Positives = 33/52 (63%)
Frame = +3
Query: 429 QKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLD 584
++AQE++ ++ L E D+E+ Q Q + L+E ++++LRH L+K LD
Sbjct: 906 KRAQEMYANVL-LGVE--DMEDDQFSQRCERMALREAERRKLRHGKLQKHLD 954
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 30.3 bits (65), Expect = 0.29
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +3
Query: 177 DIEEKRQRLEEAEKKRQAMLQAMKD----ASKTGPNFTIQKKSENFGLSNAQLERNKTKE 344
++EEK LE A+ Q ++ ++KD +K + ++ G+S+A L + K K
Sbjct: 162 ELEEKINSLESAQSIEQEVISSLKDDKTVETKNDVPEVSRPSTDTIGVSSA-LSKKKKKR 220
Query: 345 QLEEEKKISLSIRIKPLT 398
+ +KK S I+ T
Sbjct: 221 NRKNQKKKSTKQNIEATT 238
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 29.5 bits (63), Expect = 0.50
Identities = 32/156 (20%), Positives = 66/156 (42%), Gaps = 1/156 (0%)
Frame = +3
Query: 180 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQK-KSENFGLSNAQLERNKTKEQLEE 356
I E+++ + + A+ + K A + T+ + + ++ LS +R + E+
Sbjct: 280 IAERKRESGRRLQAQAAIKRKEKAAERDRELATLTELQQQSLVLSRRAFQRALEEAGFED 339
Query: 357 EKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKE 536
E +++ ++ I D+ RQ+ E L+ + D+E+ + EL E
Sbjct: 340 ESQLNAQVKNVQAKIRRAQRDQQRQEESE-----GSLDVTEIDVEQAFPLLNVPDAELDE 394
Query: 537 RQKQQLRHKALKKGLDPEALTGKHPPKIQVASKYER 644
+Q RH+ L K + K I+ A++ ER
Sbjct: 395 AGLRQKRHQRLMKANYDARVRAKAEKAIEEAAEAER 430
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 29.5 bits (63), Expect = 0.50
Identities = 23/105 (21%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Frame = +3
Query: 417 DKLRQKAQELWECIVKLETEKYDLEE----RQKRQDYDLKELKERQKQQLRHKALKKGLD 584
+K+ +K ++ + I K E +D E+ + KR+ L++ ++++K +L + K
Sbjct: 64 EKVLKKWKKRKKLIAKGLLEPFDAEDNEAKKMKREKEILRQQRQKRKSELTQLSQKVKEK 123
Query: 585 PEALTGKHPPKIQVASKYERRVDTRSYDD---QKKLFEGDLKKLN 710
+ + K +I + E D ++ D+ ++K +G+LK+ N
Sbjct: 124 FKKMRKKPARRIVTIANDEEEEDDQTMDEDAFERKSMQGELKERN 168
>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 29.5 bits (63), Expect = 0.50
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Frame = +3
Query: 462 KLETEKYDL---EERQKRQDYDLKELKERQKQQLRHKALKKG------LDPEALTGKHPP 614
KLETEK + EE+++++ D K+ KE K + K ++ LTG+ PP
Sbjct: 173 KLETEKLEANNKEEKEEKEGKDDKDDKEDSNDTKNDKKISKNEVDSSLIEASPLTGQVPP 232
Query: 615 K 617
K
Sbjct: 233 K 233
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +3
Query: 201 LEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 362
+EE E+ R+ + A D + G + +S+ G + +++ KTK+QLEEE+
Sbjct: 197 VEEQERLRKETIAAFHDVN--GNKDAVSNESDEDG--DFLVKKEKTKKQLEEEE 246
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 27.9 bits (59), Expect = 1.5
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +3
Query: 294 ENFGLSNAQLERNKT-KEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLE 470
EN L + L+R K E+L + + + + + +T E L QKA E E I KLE
Sbjct: 366 ENTSLESQLLKREKQLSEELAKLRSTNAQLTDR-ITQESKKASFLEQKASEQEEVIRKLE 424
Query: 471 TEKYDLE 491
+ D++
Sbjct: 425 KDLADVD 431
>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 218
Score = 27.9 bits (59), Expect = 1.5
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Frame = +3
Query: 180 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 359
+ EK+ + K A ++A + ASK+G T S+N L + +R + K E
Sbjct: 116 LHEKKVIDDNQYKDAMATVEAHEQASKSGDTSTSGAISKNDILKRIEEDRERHKRMRENI 175
Query: 360 KKIS---LSIRIKPLTIEGLS---VDKLRQKAQELWECI 458
IS L I T +G++ ++ L+ + ++ EC+
Sbjct: 176 WAISEPELEAEIAWNTTQGITESDLESLKDEYEKFNECL 214
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 27.5 bits (58), Expect = 2.0
Identities = 19/82 (23%), Positives = 39/82 (47%)
Frame = +3
Query: 426 RQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGK 605
++K++++ E + K E +L+ + LKE ++QK+ L+ K + D L+ K
Sbjct: 19 KRKSKKMEELLSKQREECKELQSKITNLRKQLKEGNKKQKRALQQKISQMEAD---LSQK 75
Query: 606 HPPKIQVASKYERRVDTRSYDD 671
H + Q K + + +D
Sbjct: 76 HATERQKLDKGDEETNETQQED 97
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +3
Query: 189 KRQRLEEAEKKRQAMLQAMKDAS---KTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 359
K + +++R A +QA+ D S +T + + +SEN GL N ++ +QLE+E
Sbjct: 232 KDHEILRLKEERTAAMQAIDDISGTIETIKSDCYKVESENKGLINEVMDMRNFVQQLEQE 291
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +3
Query: 465 LETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKHPP 614
LE ++YD+EE D DL+EL ++ + + ++ ++ +A G+ P
Sbjct: 84 LELDRYDIEELD--DDNDLEELDIGARRAVDARLRRRDIELDAAAGRTKP 131
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 27.1 bits (57), Expect = 2.7
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +3
Query: 348 LEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKE 527
+EE +I +S+ +KPL I K A + V E + Y+ ++Q++++ + K+
Sbjct: 13 IEETNRIRISLGLKPLDISEEKPQKELSDA-SVKSSYVDQEQQAYENWKKQEQEEINRKK 71
Query: 528 LKERQK--QQLRHK 563
+E + ++LR K
Sbjct: 72 EEELKSKFEKLRQK 85
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 267 PNFTIQKKSENFGLSNAQLERNKTKEQLEE-EKKISLSIRIKPLTIEGL 410
P FTI++K +NF ++N ERN ++L + ++ + ++ I+ L
Sbjct: 490 PGFTIEQKDKNFSINN---ERNNFLQKLSTLDSSLAALVNVQRKLIKAL 535
>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 680
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 419 QTPTEGPGTLGVHRQTRDREIRSRREAK 502
++ T+G GT V + TR + RSRR+ +
Sbjct: 203 ESSTKGNGTFTVSKTTRKNQPRSRRDPR 230
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 26.2 bits (55), Expect = 4.7
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 16/100 (16%)
Frame = +3
Query: 339 KEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWEC--------IVKLETEK--YDL 488
+EQ E +K+ I+ + ++G V+K ++ E E K+E K Y L
Sbjct: 15 EEQRNEIEKLKNLTGIEEVHVDGAKVNKRKRTFDEQSEITKDYIEYDFSKIEDTKGGYLL 74
Query: 489 EE------RQKRQDYDLKELKERQKQQLRHKALKKGLDPE 590
EE R+K + +L+E +ERQK +LR L LDPE
Sbjct: 75 EEKKVEDLREKPAERELREQEERQK-KLRLAPL--NLDPE 111
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 4.7
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = -2
Query: 453 TPRVPGPSVGVCRRRDPRWSAA*CGWTGRSSSPLPAAPWSC 331
TP VP S P S + TG SSSPLP+ SC
Sbjct: 302 TPTVPPTSTSSTSTPPPPASTS---STGTSSSPLPSTSTSC 339
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 4.7
Identities = 19/68 (27%), Positives = 26/68 (38%)
Frame = +2
Query: 509 GLRLKRAQRKTKAATEAQSSQEGSRPRSAHRQAPAQNSSSVQVREACRHTILRRPKETVR 688
GL ++ T T A+SS+E + +S+S Q E PKE R
Sbjct: 448 GLAAPIGRKNTLRRTPAKSSEEAKSTTNDSSPPKDSSSTSTQPTEQSNAQQAPSPKEEER 507
Query: 689 G*PKETEQ 712
P E Q
Sbjct: 508 PLPSEPSQ 515
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 25.8 bits (54), Expect = 6.2
Identities = 16/82 (19%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Frame = +3
Query: 321 LERNKTKEQLEEEK----KISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYD- 485
++ ++K+Q+++ + K ++ P ++ D + + E + ++E EK +
Sbjct: 113 MQERQSKKQIQDRESDYQKQRYDRQLTPTRVDAFQPDGTQSNGRSYAEVMRQVELEKEER 172
Query: 486 ---LEERQKRQDYDLKELKERQ 542
+E Q+R++ LKE++E +
Sbjct: 173 RVHMELNQRRREGTLKEVEEEE 194
>SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit
Snu23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 25.8 bits (54), Expect = 6.2
Identities = 15/69 (21%), Positives = 36/69 (52%)
Frame = +3
Query: 180 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 359
I EKR LEE +++ + + + + K ++++++ E + + +LE K + + ++
Sbjct: 65 IIEKRATLEEVKERMEYWRRQLLEPEKGSEEYSLKERVERY---HQELEAKKLRRKQKKV 121
Query: 360 KKISLSIRI 386
K S R+
Sbjct: 122 NKEKNSPRL 130
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 480 YDLEERQKRQDYDLKELKERQKQQLRHKALKK 575
Y+ E+R KRQ+ E + R+K++ R A +K
Sbjct: 242 YEREQRAKRQEQFRLERENREKEKRRIAAQRK 273
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 25.8 bits (54), Expect = 6.2
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +3
Query: 183 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTK--EQLEE 356
EEK +++EE E + + ++D K+ +++K S A+ +R+ + E LE+
Sbjct: 132 EEKDRKIEEGELTSEEEKEPIQDLRKSHKRKSVEKSSVPNKKHKAERKRSPSPKIEILED 191
Query: 357 EKKI 368
+++I
Sbjct: 192 DEEI 195
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 25.8 bits (54), Expect = 6.2
Identities = 20/91 (21%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Frame = +3
Query: 279 IQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIRI-KPLTIEGLSVDKLRQKAQELWEC 455
++K+ NA++E+ + +EEE++ I I + E + KL ++ +E+ E
Sbjct: 25 LEKEHLRMTQQNAEIEKEDEEYNIEEEEEAERDIEISSESSDEEAELKKLEEEGEEV-EK 83
Query: 456 IVKLETEKYDLEERQKRQDYDLKELKERQKQ 548
I++ + E+ + QK + +L+ + K+
Sbjct: 84 ILR-DEERIKKRKIQKNRAANLQRTLQPPKR 113
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 450 ECIVKLETEKYDLEERQKRQDYDLKELKERQKQ 548
E + KLE E+Y+ + + + +K LK+ Q +
Sbjct: 391 EAMTKLEEERYEFDRHIEATSWTIKSLKKIQNR 423
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 25.4 bits (53), Expect = 8.2
Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Frame = +3
Query: 180 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKS-ENFGLSNAQLERNKTKEQLEE 356
+E+ Q + +K + + + A+K + T +KK+ +++ ++E + K L +
Sbjct: 390 LEKFEQTERDISEKNEEVKSLREKAAKVKNDCTSEKKTRQSYEQQTVKIEE-QLKFLLNK 448
Query: 357 EKKISLSIRIKPLTIEGLSVDKLRQKAQELWECI--VKLETEKYDLEERQKRQDYDLKEL 530
EKK+ S IE LS +K + I KL +E DL R ++++ L ++
Sbjct: 449 EKKLKKS-------IEALSFEKSEAENSLSSHDIDSQKLNSEIADLSLRLQQEELSLDDI 501
Query: 531 KE 536
++
Sbjct: 502 RK 503
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 522 KELKERQKQQLRHKALKKGLDPEALTG 602
KE+K+RQ+ Q K +++GL +G
Sbjct: 461 KEIKDRQRTQKEEKVVQRGLTQVLTSG 487
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 8.2
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -1
Query: 295 SLFFWMVKLGPVLLASFMAWSIAW 224
SL+FW L P +F++W + +
Sbjct: 111 SLYFWTAYLSPPKYRAFLSWFLGY 134
>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 8.2
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 411 SVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQKQQLRH 560
S++ +R + EC ++ + +EER K D + + E QK++L H
Sbjct: 21 SLNPIRSSLIKQEECYKTVDGDDNPIEERIKACDAGI-QTSEEQKKELEH 69
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.4 bits (53), Expect = 8.2
Identities = 23/86 (26%), Positives = 40/86 (46%)
Frame = +3
Query: 213 EKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIRIKP 392
EK +Q Q K +K + Q N +N LE ++ EEE++I ++ R K
Sbjct: 327 EKNQQRREQQDKGENKKRQDDVDQATDNN---TNTILEDDEKDNDEEEEEEI-VNAREKN 382
Query: 393 LTIEGLSVDKLRQKAQELWECIVKLE 470
L + + + +K E W+ +V+ E
Sbjct: 383 LLNQQFNWTAIVKKLGENWDQLVRFE 408
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.4 bits (53), Expect = 8.2
Identities = 23/86 (26%), Positives = 40/86 (46%)
Frame = +3
Query: 213 EKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIRIKP 392
EK +Q Q K +K + Q N +N LE ++ EEE++I ++ R K
Sbjct: 327 EKNQQRREQQDKGENKKRQDDVDQATDNN---TNTILEDDEKDNDEEEEEEI-VNAREKN 382
Query: 393 LTIEGLSVDKLRQKAQELWECIVKLE 470
L + + + +K E W+ +V+ E
Sbjct: 383 LLNQQFNWTAIVKKLGENWDQLVRFE 408
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 8.2
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +3
Query: 324 ERNKTKEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQ-ELWE 452
E N +EQ++E+KK+S S + +++ L D L +K + E++E
Sbjct: 491 ELNNLREQIKEQKKVSESTQ---SSLQSLQRDILNEKKKHEVYE 531
>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 251
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +3
Query: 411 SVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKER 539
+V++L+ K +E + + K + EK D EE+ K++ KE+
Sbjct: 208 TVEELQNKGKEKQKELKKGKREKKDEEEKPKKKKQKKSSKKEK 250
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,996,442
Number of Sequences: 5004
Number of extensions: 30996
Number of successful extensions: 247
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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