Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31490
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    29   0.56 
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    27   3.0  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   5.2  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.2  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    25   9.2  

>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 436 HNPVLRLHYLNLSREFRSLARGGGDL--RNRFTLSMVSSLVSEVRN 305
           HNP   L  L +SRE  SL     D   + R TL  +S+LVS  +N
Sbjct: 255 HNPSTLLSILPISRELNSLLNRIFDRNPKTRITLPELSTLVSNCKN 300


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = -3

Query: 731 LRQLAKRGMCCKAIKLGNARVFPSHDVVKRRPVNCNTTHY----RANWVPGPPF 582
           L+ +   G+C  ++ L +    P H  VKR PV  N ++      +  VP PPF
Sbjct: 3   LKYILASGICLVSL-LSSTNAAPRHLYVKRYPVIYNASNITEVSNSTTVPPPPF 55


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -1

Query: 334  VSSLVSEVRNGFRFAVSVRV-TVASTHSNNNVRLVVVVESLLQLTS 200
            V SL ++  +  R A  V   TVA    +N+ RL VV++SLL + S
Sbjct: 1288 VDSLPTDANDRLREATVVLFGTVAQHLPSNDPRLAVVMDSLLSVLS 1333


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 197 ETGELKEALDDDNKPHVIVAVRGSYSYTNTDGKPETI 307
           ETG   E  D++    V+V  +   +    DGKP  I
Sbjct: 85  ETGTYPEKDDENTNLQVVVDTKAQLNVNVNDGKPNDI 121


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -1

Query: 349 FTLSMVSSLVSEVRNGFRFAVSVRVTVASTHSNNNVRLVVVVESLL-QLT 203
           F+   ++ L   + +G  +AVS++  + ++   N+ +L  ++ SLL Q+T
Sbjct: 247 FSAEFLNGLTDHMDSGIDYAVSLQKLIDASMDKNSQKLARLIFSLLYQIT 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,004,666
Number of Sequences: 5004
Number of extensions: 57226
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)