Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31490
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    66   5e-13
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.8  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    23   2.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   4.2  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   4.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   4.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.7  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 65.7 bits (153), Expect = 5e-13
 Identities = 36/81 (44%), Positives = 48/81 (59%)
 Frame = +2

Query: 116 IVRSEFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVRGSYSYTNTDGK 295
           I   + + + DG Y  NFETSNGI   E+G+ K+    DN+  V+   +GS SYT  DG+
Sbjct: 29  ITSQQLEVNFDGNYINNFETSNGISHQESGQPKQV---DNETPVVS--QGSDSYTAPDGQ 83

Query: 296 PETITYFADETGYHAQGESIP 358
             +ITY ADE G+  QG  IP
Sbjct: 84  QVSITYVADENGFQVQGSHIP 104


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 173 TSNGIVRSETGELKEAL 223
           TS G  R  TGE+KEA+
Sbjct: 403 TSKGEYRMSTGEMKEAI 419


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = -2

Query: 579 FLYQMNFIVFVHDILKTQQIVKKNVQKNMAVSIKLITSNKRMWWMLRHT 433
           F Y+   +V + +  KT + +    + N+A+S+ L  +  ++W+  R T
Sbjct: 15  FTYEQ--LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRT 61


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 662 SHDVVKRRPVNCNTTHYRANWVPGPPF 582
           S +  K++P +C+T  YR   V  P F
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTPLF 586


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 241 RLVVVVESLLQLTSFATHDAVGSLEIVVVSSIGAGV 134
           RL  +  +L     FA+H+ VGS  + V  +  AG+
Sbjct: 460 RLKAIRATLKASPFFASHEVVGSSLLFVHDTKNAGI 495


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 241 RLVVVVESLLQLTSFATHDAVGSLEIVVVSSIGAGV 134
           RL  +  +L     FA+H+ VGS  + V  +  AG+
Sbjct: 375 RLKAIRATLKASPFFASHEVVGSSLLFVHDTKNAGI 410


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 241 RLVVVVESLLQLTSFATHDAVGSLEIVVVSSIGAGV 134
           RL  +  +L     FA+H+ VGS  + V  +  AG+
Sbjct: 694 RLKAIRATLKASPFFASHEVVGSSLLFVHDTKNAGI 729


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 291 ANLKPLRTSLTRLDTMLRVNLFLRS 365
           A ++P   + T    ++RVNLF+RS
Sbjct: 45  ARIRPSGENATDGPAIVRVNLFVRS 69


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 291 ANLKPLRTSLTRLDTMLRVNLFLRS 365
           A ++P   + T    ++RVN+F+RS
Sbjct: 45  ARIRPSGENATDGPAVVRVNIFVRS 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,167
Number of Sequences: 438
Number of extensions: 4403
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)