Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31489
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 33 0.028
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 29 0.34
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 29 0.45
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 28 1.0
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 28 1.0
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 27 2.4
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 26 3.2
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 25 5.6
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom... 25 7.3
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 9.7
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera... 25 9.7
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 25 9.7
SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po... 25 9.7
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 25 9.7
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 25 9.7
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 33.1 bits (72), Expect = 0.028
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +1
Query: 364 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNLTIQKKSENFGLSNAQLERNKTKEQLEEEK 543
EEKR+++EE++K + +LQA + K N + KKS + + KE+ + EK
Sbjct: 138 EEKRRKIEESDKWHRVLLQA--EGKKLKDNEQLLKKSIRRKEKEKKKSSDAWKERKDNEK 195
Query: 544 K 546
K
Sbjct: 196 K 196
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 29.5 bits (63), Expect = 0.34
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 358 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNLTIQKKSENFGLSNAQLE-RNKTKEQLE 534
+ EEK +R E + KR+A +A ++A + ++K++ NA+ E K K + E
Sbjct: 636 EAEEKAKREAEEKAKREAEEKAKREAEENAKR-EAEEKAKREAEENAKREAEEKVKRETE 694
Query: 535 EEKK 546
E K
Sbjct: 695 ENAK 698
Score = 29.1 bits (62), Expect = 0.45
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 358 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNLTIQKKSENFGLSNAQLE-RNKTKEQLE 534
+ EEK +R E + KR+A +A ++A + ++K++ NA+ E K K + E
Sbjct: 620 EAEEKAKREAEEKAKREAEEKAKREAEEKAKR-EAEEKAKREAEENAKREAEEKAKREAE 678
Query: 535 EEKK 546
E K
Sbjct: 679 ENAK 682
Score = 27.5 bits (58), Expect = 1.4
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 358 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNLTIQKKSENFGLSNAQLE-RNKTKEQLE 534
+ EEK +R E + KR+A +A ++A + ++K++ A+ E K K + E
Sbjct: 572 EAEEKAKREAEEKAKREAEEKAKREAEENAKR-EAEEKAKREAEEKAKREAEEKAKREAE 630
Query: 535 EEKK 546
E+ K
Sbjct: 631 EKAK 634
Score = 27.5 bits (58), Expect = 1.4
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 358 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNLTIQK-KSENFGLSNAQLERNKTKEQLE 534
+ EEK +R E + KR+A +A ++A + +K K E + + E N +E E
Sbjct: 612 EAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEE 671
Query: 535 EEKK 546
+ K+
Sbjct: 672 KAKR 675
Score = 26.6 bits (56), Expect = 2.4
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 358 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNLTIQKKSENFGLSNAQLE-RNKTKEQLE 534
+ EEK +R E + KR+A A ++A + ++K++ A+ E K K + E
Sbjct: 580 EAEEKAKREAEEKAKREAEENAKREAEEKAKR-EAEEKAKREAEEKAKREAEEKAKREAE 638
Query: 535 EEKK 546
E+ K
Sbjct: 639 EKAK 642
Score = 26.6 bits (56), Expect = 2.4
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 358 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNLTIQKKSENFGLSNAQLE-RNKTKEQLE 534
+ EEK +R E KR+A +A ++A + ++K++ A+ E K K + E
Sbjct: 588 EAEEKAKREAEENAKREAEEKAKREAEEKAKR-EAEEKAKREAEEKAKREAEEKAKREAE 646
Query: 535 EEKK 546
E+ K
Sbjct: 647 EKAK 650
Score = 26.6 bits (56), Expect = 2.4
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 358 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNLTIQKKSENFGLSNAQLE-RNKTKEQLE 534
+ EEK +R E + KR+A +A ++A + ++K++ A+ E K K + E
Sbjct: 604 EAEEKAKREAEEKAKREAEEKAKREAEEKAKR-EAEEKAKREAEEKAKREAEEKAKREAE 662
Query: 535 EEKK 546
E K
Sbjct: 663 ENAK 666
Score = 25.8 bits (54), Expect = 4.2
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +1
Query: 367 EKRQRLEEAEK-KRQAMLQAMKDASKTGPNLTIQK-KSENFGLSNAQLERNKTKEQLEEE 540
E++ RLE E KR+A QA ++A + +K K E + + E N +E E+
Sbjct: 550 EEKARLEAEENAKREAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKA 609
Query: 541 KK 546
K+
Sbjct: 610 KR 611
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 29.1 bits (62), Expect = 0.45
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +1
Query: 358 DIEEKRQRLEEAEKKRQAMLQAMKD----ASKTGPNLTIQKKSENFGLSNAQLERNKTKE 525
++EEK LE A+ Q ++ ++KD +K + ++ G+S+A ++ K +
Sbjct: 162 ELEEKINSLESAQSIEQEVISSLKDDKTVETKNDVPEVSRPSTDTIGVSSALSKKKKKRN 221
Query: 526 QLEEEKK 546
+ ++KK
Sbjct: 222 RKNQKKK 228
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 27.9 bits (59), Expect = 1.0
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +1
Query: 382 LEEAEKKRQAMLQAMKDASKTGPNLTIQKKSENFGLSNAQLERNKTKEQLEEEK 543
+EE E+ R+ + A D + G + +S+ G + +++ KTK+QLEEE+
Sbjct: 197 VEEQERLRKETIAAFHDVN--GNKDAVSNESDEDG--DFLVKKEKTKKQLEEEE 246
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.9 bits (59), Expect = 1.0
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +1
Query: 370 KRQRLEEAEKKRQAMLQAMKDASKTGPNLT---IQKKSENFGLSNAQLERNKTKEQLEEE 540
K + +++R A +QA+ D S T + + +SEN GL N ++ +QLE+E
Sbjct: 232 KDHEILRLKEERTAAMQAIDDISGTIETIKSDCYKVESENKGLINEVMDMRNFVQQLEQE 291
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 210 PLFAPFVDVFLQLFIQVRPLLVLTLDEFWISLTLLFRSG 94
P+FA + L LF+Q+ P + + FW S+ L+ +G
Sbjct: 796 PIFAYVISKCLNLFMQIDPSIGVA---FWSSMVLVVAAG 831
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 26.2 bits (55), Expect = 3.2
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 364 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNLTIQKKSENFGLSNAQLERNKTK--EQLEE 537
EEK +++EE E + + ++D K+ +++K S A+ +R+ + E LE+
Sbjct: 132 EEKDRKIEEGELTSEEEKEPIQDLRKSHKRKSVEKSSVPNKKHKAERKRSPSPKIEILED 191
Query: 538 EKKI 549
+++I
Sbjct: 192 DEEI 195
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 5.6
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -3
Query: 476 SLFFWMVKLGPVLLASFMAWSIAW 405
SL+FW L P +F++W + +
Sbjct: 111 SLYFWTAYLSPPKYRAFLSWFLGY 134
>SPAC6F6.12 |||autophagy associated protein
Atg24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 401
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 127 EFIKRQDQKRSDLDEQLKEY 186
E +KR+DQK+ D+ E L+EY
Sbjct: 272 ELLKRRDQKQQDV-EALQEY 290
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +2
Query: 182 NTSTNGANSGPRRRMSSNALKRSRPSARFLV 274
N A P SSN+ K S PS FLV
Sbjct: 793 NIPLGHALGNPESNNSSNSFKPSHPSQSFLV 823
>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -2
Query: 210 PLFAPFVDVFLQLFIQVRPLLVLTLDEFWISLTLLFRSGC 91
PL + +D + ++F+Q++ VL + SL + SGC
Sbjct: 281 PLLSLSIDFYFRVFVQIKAKPVLVKNLQSQSLLIYHCSGC 320
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 367 EKRQRLEEAEKKRQAMLQAMKDASKTGPNLTIQKKSENFGLS 492
+++ L K A+LQ M G LT+Q+ ++NFG S
Sbjct: 1098 DRKSSLSSVSDKDAAVLQRM------GAQLTLQQMAQNFGSS 1133
>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 218
Score = 24.6 bits (51), Expect = 9.7
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +1
Query: 361 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNLTIQKKSENFGLSNAQLERNKTKEQLE 534
+ EK+ + K A ++A + ASK+G T S+N L + +R + K E
Sbjct: 116 LHEKKVIDDNQYKDAMATVEAHEQASKSGDTSTSGAISKNDILKRIEEDRERHKRMRE 173
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 24.6 bits (51), Expect = 9.7
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Frame = +1
Query: 367 EKRQRLEEAEKKRQAMLQAMKDASKTGPNLTIQKKSENFGLSNAQLER---NKTKEQLEE 537
E RQ+ EE ++++QAM +A + A+ T ++ SE LS + +R K K++LE
Sbjct: 55 ELRQKYEEEQRRQQAM-EAKRIAAST------RQTSERPPLSAEEAKRIREVKEKDRLES 107
Query: 538 EK 543
+K
Sbjct: 108 KK 109
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 24.6 bits (51), Expect = 9.7
Identities = 15/52 (28%), Positives = 30/52 (57%)
Frame = +1
Query: 391 AEKKRQAMLQAMKDASKTGPNLTIQKKSENFGLSNAQLERNKTKEQLEEEKK 546
A + RQ + + ++++ KT L K E+ + + E N+TK++++ EKK
Sbjct: 174 ARRTRQRLAEHLENSKKT--ILQHDNKEEDKEIHS---EENETKDEIKSEKK 220
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.309 0.125 0.338
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,324,763
Number of Sequences: 5004
Number of extensions: 17882
Number of successful extensions: 90
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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