Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31489
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0847 + 23630937-23631099,23631200-23631396,23631604-236317... 32 0.35
03_06_0155 - 32031370-32031707,32033066-32033279 32 0.35
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432... 31 0.61
05_04_0158 + 18613265-18615304 30 1.1
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 28 5.6
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 27 9.9
01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481... 27 9.9
>12_02_0847 +
23630937-23631099,23631200-23631396,23631604-23631738,
23631904-23632077,23632195-23632407,23632507-23632751,
23632890-23632930,23633200-23633238,23633552-23633565
Length = 406
Score = 31.9 bits (69), Expect = 0.35
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +1
Query: 358 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNLTIQKKSENFGLSNAQLERNKTKEQLEE 537
+I E+R+R + ++ A+L+AMK+ N ++ E N +LE K+QL+E
Sbjct: 41 EIAEERERFQLEQRGNDALLEAMKE-ELVAANNELEAAKEEISRKNNELE--SVKKQLQE 97
Query: 538 EK 543
+
Sbjct: 98 SE 99
>03_06_0155 - 32031370-32031707,32033066-32033279
Length = 183
Score = 31.9 bits (69), Expect = 0.35
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +1
Query: 361 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNLTIQKKSENFGLSNAQLERNKTKEQLEEE 540
IEE +QR EEA + +Q + +A K + + G+ + R K+ E L E+
Sbjct: 98 IEELKQREEEATQAQQQADVKLLEAKKLASQYQKEADKCSSGMDTCEEAREKSSEALVEQ 157
Query: 541 KKI 549
+K+
Sbjct: 158 RKL 160
>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
27043601-27043705,27043828-27044257,27044356-27044517,
27044565-27045260,27045349-27046128,27046441-27046654,
27047621-27047981,27047993-27048140,27048276-27048419,
27048784-27048888,27049749-27049794,27050089-27050255,
27050338-27050490,27050654-27050950,27051053-27051220,
27051298-27051363,27051451-27051927,27052031-27052768,
27052935-27053120
Length = 1993
Score = 31.1 bits (67), Expect = 0.61
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +1
Query: 367 EKRQRLEEAEKKRQAMLQAMKDASKTGPNLTIQKKSENFGLSNAQLERNKTKEQLEE 537
E+ ++ ++ + AMLQ +KD N +Q+K ++ ++E +TK Q +E
Sbjct: 1431 EEAKKFQKIKMDLLAMLQRVKDVENLNRNEKMQRKDMEEKIARQRMEIEETKRQRDE 1487
>05_04_0158 + 18613265-18615304
Length = 679
Score = 30.3 bits (65), Expect = 1.1
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Frame = +1
Query: 364 EEKRQRLEEAEKKRQAML-----QAMKDASKTGPNLTIQKK----SENFGLSNAQLERNK 516
+EK ++ +E E K Q L +AMK KTG N I+KK +E +A++ ++K
Sbjct: 608 QEKVEKNQEKEMKIQEKLGEIFDKAMKSEEKTGQNPGIEKKIQDTAEKKQEHDARVVQDK 667
Query: 517 TKEQLEEEKKI 549
++ +E KKI
Sbjct: 668 VEKIQDEAKKI 678
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +1
Query: 364 EEKRQRLEEAEK---KRQAMLQAMKDASKTGPNLTIQKKSENFGLSNAQLERNKTKEQL 531
EE +++ + +K + Q +Q +++ + NL ++++ +N + AQ+E + EQL
Sbjct: 1583 EELLKKIHDDDKHILELQFTIQRLEENTAAKENLLLREREQNDATTKAQIESQERNEQL 1641
>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 195 FVDVFLQLFIQVRPLLVLTLDEFWISLTLLFRSGC 91
F+ +F++L V ++ L W SLT LF GC
Sbjct: 1930 FMVLFVELLADVFSVIQTALKIRWHSLTTLFLQGC 1964
>01_06_1656 +
38946922-38947542,38947640-38947739,38948045-38948189,
38948868-38948991,38949443-38949960,38950111-38950458,
38950557-38950638,38951309-38951707,38951790-38951927,
38952063-38952108,38952200-38952369
Length = 896
Score = 27.1 bits (57), Expect = 9.9
Identities = 21/61 (34%), Positives = 32/61 (52%)
Frame = +1
Query: 364 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNLTIQKKSENFGLSNAQLERNKTKEQLEEEK 543
E+KR+ EEAE K+Q Q ++A K QK+ E A+ + + K+Q E EK
Sbjct: 369 EQKRREKEEAEMKKQQRKQE-EEAQKE------QKRREK---EEAETRKQQKKQQEEAEK 418
Query: 544 K 546
+
Sbjct: 419 E 419
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.309 0.125 0.338
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,538,971
Number of Sequences: 37544
Number of extensions: 146543
Number of successful extensions: 403
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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