Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31486
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   1.0  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    24   1.8  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    24   1.8  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   4.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   4.1  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   7.2  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -2

Query: 620 LPKVNSFFFTTFNWLRKLNSAAFFWSLANL--FSYLETFFSVGLTNLPLRSLTWEFRSE 450
           LPKV   + T  +W   ++   F + +A L  F+ +  F  VG   +PL    WE  +E
Sbjct: 298 LPKVR--YATALDWFLLMS---FGYCIATLLEFAGVHYFTKVGSGEIPLEEEEWENENE 351


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -2

Query: 704 VHASTSSSLPSDLPACPSTSQAFS-LCLPLPKVNS 603
           VH       P  +  C + +   S LCLP P++NS
Sbjct: 21  VHVYHPYRQPDGMNQCQAVNGHCSHLCLPAPRINS 55


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -2

Query: 704 VHASTSSSLPSDLPACPSTSQAFS-LCLPLPKVNS 603
           VH       P  +  C + +   S LCLP P++NS
Sbjct: 21  VHVYHPYRQPDGMNQCQAVNGHCSHLCLPAPRINS 55


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +2

Query: 314 VNLRTLTTPTKILLRGFAKTTMNASLVLKMKNSIWN 421
           + +  +  P   LL GF ++T + +  ++  N  WN
Sbjct: 13  IGVLLMLAPINALLLGFVQSTPDNNKTVREFNVYWN 48


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/64 (18%), Positives = 27/64 (42%)
 Frame = +3

Query: 447 DLRPELPSQRPQRQIRQAHTKEGFQIRKQIRQAPEEGRRIQLP*PIEGREKEGIHLGKRK 626
           + +P++  QR ++      T+     +  + + P  G+R +    IE   +   +    K
Sbjct: 178 EYKPDVEEQRYKQVEISQMTEPSSSTKSYVLEGPRNGKRKRKSSTIENESETESNASSTK 237

Query: 627 TKRK 638
           TK +
Sbjct: 238 TKMR 241


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 688 EVEA*TSYTQFIKTFHHCHN 747
           E +A     Q +++ HHCH+
Sbjct: 8   EADASHCIQQILESVHHCHH 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,097
Number of Sequences: 438
Number of extensions: 2401
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)