Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31484
         (449 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q08738 Cluster: Larval cuticle protein LCP-30 precursor...   177   7e-44
UniRef50_UPI0000EBCA66 Cluster: PREDICTED: hypothetical protein;...    32   6.6  

>UniRef50_Q08738 Cluster: Larval cuticle protein LCP-30 precursor;
           n=1; Bombyx mori|Rep: Larval cuticle protein LCP-30
           precursor - Bombyx mori (Silk moth)
          Length = 239

 Score =  177 bits (432), Expect = 7e-44
 Identities = 93/146 (63%), Positives = 93/146 (63%)
 Frame = +3

Query: 12  MRVFLAICLSLTVALAAETGKYTPFQYNRVYSTVSPFVYKPGRYVADPGRYDPSRDNSGR 191
           MRVFLAICLSLTVALAAETGKYTPFQYNRVYSTVSPFVYKPGRYVADPGRYDPSRDNSGR
Sbjct: 1   MRVFLAICLSLTVALAAETGKYTPFQYNRVYSTVSPFVYKPGRYVADPGRYDPSRDNSGR 60

Query: 192 YIPDNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEDQSKYLGDAYKGSSIXXXX 371
           YIPDNS                                 KED SKYLGDAYKGSSI    
Sbjct: 61  YIPDNSGAYNGDRGDRGAAGGFYTGSGTAGGPGGAYVGTKEDLSKYLGDAYKGSSIVPLP 120

Query: 372 XXXXXXXXXXXXXXXASKVVTPTYVA 449
                          ASKVVTPTYVA
Sbjct: 121 VVKPTIPVPVTPTYVASKVVTPTYVA 146


>UniRef50_UPI0000EBCA66 Cluster: PREDICTED: hypothetical protein;
           n=1; Bos taurus|Rep: PREDICTED: hypothetical protein -
           Bos taurus
          Length = 255

 Score = 31.9 bits (69), Expect = 6.6
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -3

Query: 189 GQSCRGWGHNGLDQLHSG-LAYRRMEKQ*SKLGCTGKECTFQFRRPAPLSETGR 31
           G +   WG   +D    G +A+RR  K+ S  GC G E    FR      E GR
Sbjct: 144 GAAAASWGRINIDSAPGGRVAWRRPPKRLSANGCHGNEAPSVFRWAEGGREAGR 197


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 384,848,984
Number of Sequences: 1657284
Number of extensions: 6194906
Number of successful extensions: 19259
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19232
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)