Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31484
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   1.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   1.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   1.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.2  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 377 HDGQGNNAGSLVSITKVFALVLL 309
           H G G N G  + ITK+ A+ +L
Sbjct: 148 HTGVGRNVGYKIPITKLTAMGVL 170


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 377 HDGQGNNAGSLVSITKVFALVLL 309
           H G G N G  + ITK+ A+ +L
Sbjct: 148 HTGVGRNVGYKIPITKLTAMGVL 170


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 377 HDGQGNNAGSLVSITKVFALVLL 309
           H G G N G  + ITK+ A+ +L
Sbjct: 148 HTGVGRNVGYKIPITKLTAMGVL 170


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = +3

Query: 36  LSLTVALAAETGKYTPFQYNRVYSTVSPFVYKPGRYVADPGRYDPSRDNSGRYIPDNS 209
           ++LT+A   +T K  P   N   +    ++Y       +  R   +  NS + + DNS
Sbjct: 295 MNLTLAKMEKTSKPLPMVDNPESTGNLVYIYNNPFSDVEERRVSKTAMNSNQIVSDNS 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,579
Number of Sequences: 438
Number of extensions: 1799
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)