Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31482
         (340 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    25   3.2  
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    25   3.2  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    25   4.2  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      24   5.5  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    24   5.5  
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    23   9.6  

>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 234 TPSVVLCSE*GRALGATARPNVAVSPH 154
           TPS V  ++  R +G  A+  VA++PH
Sbjct: 36  TPSYVAFTDTERLIGDAAKNQVAMNPH 62


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 234 TPSVVLCSE*GRALGATARPNVAVSPH 154
           TPS V  ++  R +G  A+  VA++PH
Sbjct: 36  TPSYVAFTDTERLIGDAAKNQVAMNPH 62


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 183 ARPNVAVSPHWPNADRSSRLTFYKL 109
           +R N ++SP++  +D++  L FY L
Sbjct: 168 SRENASLSPNFKASDKTFALAFYNL 192


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 245 ERIVAPSINTFNHLTND*AYTRPELRPL 328
           E +V PS+   NHL+++    R  L PL
Sbjct: 66  ESVVIPSLGISNHLSDNKCLARQVLFPL 93


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -3

Query: 161 LHTGQTPTARPA*HFINYYVILIQPNKGTKNI 66
           L TGQTP  RP  H  N Y +   PN GT  +
Sbjct: 782 LQTGQTPVVRPKLH--NTYGLDHYPN-GTNAV 810


>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 127 AGRAVG-VWPVWRHGNVRASRRAERPSLLRA 216
           AG A    +P +R    + +R+A RP+ LRA
Sbjct: 20  AGEAAAKYYPAYRENVPKKARKAVRPTKLRA 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,319,891
Number of Sequences: 5004
Number of extensions: 23033
Number of successful extensions: 44
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)