Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31482
         (340 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0131 + 1050028-1050459,1051599-1051701,1052338-1052393,105...    28   2.1  
02_04_0625 - 24547435-24547569,24547674-24547742,24547871-245479...    27   5.0  
07_01_1002 + 8463187-8463585                                           26   6.6  
06_03_0841 - 25297531-25298547                                         26   6.6  
01_06_0794 + 32050413-32050523,32050663-32051391                       26   6.6  
02_05_0605 + 30300977-30301912                                         26   8.7  

>08_01_0131 +
           1050028-1050459,1051599-1051701,1052338-1052393,
           1052517-1052693,1052820-1052933,1053057-1053386
          Length = 403

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 164 TATLGRAVAPSARPYSEHKTTDGVIEPERIVAPS 265
           TA  G AVA +A P   H  + GV+   R  +PS
Sbjct: 34  TAAAGAAVAAAATPRDAHAASGGVMGGRRSSSPS 67


>02_04_0625 - 24547435-24547569,24547674-24547742,24547871-24547997,
            24548086-24548209,24548714-24548832,24548953-24549044,
            24549124-24549329,24549429-24549534,24549636-24549740,
            24549836-24549942,24550030-24550253,24550341-24550468,
            24550945-24551022,24551338-24552012,24552655-24552798,
            24552985-24553064,24553958-24554029,24554124-24554343,
            24554460-24554590,24555118-24555243,24555567-24555695,
            24556156-24556318,24556408-24556545,24557198-24557317,
            24557521-24557682,24557751-24557876,24558172-24558342,
            24558435-24558590,24559061-24559408
          Length = 1526

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +3

Query: 135  SGRRLASVETRQR*GEPSRRAPVPTQSTKQQMALL 239
            + R+++   +R+  G+P RR   PT ++  ++ALL
Sbjct: 1237 ASRQVSEHRSRKGNGQPRRRRSTPTSASLSEIALL 1271


>07_01_1002 + 8463187-8463585
          Length = 132

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 9/42 (21%)
 Frame = +2

Query: 128 RDERSAFGQCGDTAT---------LGRAVAPSARPYSEHKTT 226
           RDE  A   CG  AT         + RA  PSA P S  KTT
Sbjct: 47  RDEEEAASPCGCAATNRNLTMARSVARAATPSAPPSSPTKTT 88


>06_03_0841 - 25297531-25298547
          Length = 338

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 218 CALSRDGRSARRLALTLPCLH 156
           CA+ +DG +   LA  LPC H
Sbjct: 264 CAVCKDGIAQGELATQLPCAH 284


>01_06_0794 + 32050413-32050523,32050663-32051391
          Length = 279

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 104 VILIQPNKGTKNI*AFFFSIFFYCKATG 21
           V+L+ P+ G K    F   + F+C+ATG
Sbjct: 186 VLLLDPHAGAKAKPKFECHVAFHCRATG 213


>02_05_0605 + 30300977-30301912
          Length = 311

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 218 CALSRDGRSARRLALTLPCLH 156
           CA+ +DG  A   A  LPC H
Sbjct: 231 CAVCKDGMEAGERARRLPCAH 251


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,619,130
Number of Sequences: 37544
Number of extensions: 152257
Number of successful extensions: 354
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)